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| -rw-r--r-- | topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi | 30 |
1 files changed, 21 insertions, 9 deletions
diff --git a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi index 11f5f15..8a32255 100644 --- a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi +++ b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi @@ -23,15 +23,16 @@ This is divided into two major components: * Monitoring system for the rqtl script ### RQTL Api -This component serves as the entry point to the gn3 rqtl system and involves -rewriting the current API to replace file transfers between GN2 and GN3 with JSON data -We will also implement tests and enhance error handling. +This component serves as the entry point to the gn3 rqtl system and can be subdivided into +data validation and preprocessing stage, data computation stage, output processing stage. +In the component the task mainly involves rewriting the current API to replace file transfers between GN2 and GN3 with JSON data We will also implement tests and enhance error handling. **Subtasks:** - [ ] Rewrite the RQTL API endpoints -- [ ] add validation for data submitted by user +- [ ] add validation and preprocessing for data submitted from the +- [ ] Processing output from the external script - [ ] Add unit tests for this module - [ ] Implement better error handling for the API @@ -93,14 +94,25 @@ We aim to run computations on clusters rather than locally. This project will se => https://issues.genenetwork.org/topics/lmms/rqtl2/using-rqtl2 ### Tasks -- [ ] Rewrite the RQTL API endpoints -- [ ] Minor: validation for data from the client -- [ ] Add unit tests for the rqtl api module +* stage 1 * + +- [ ] Implement the RQTL API endpoints +- [ ] validation and preprocessing for data from the client - [ ] Implement state-of-the-art error handling +- [ ] Add unit tests for the rqtl api module - [ ] Make improvements to the current R script if possible + +* stage 2 * + - [ ] Task queue integration (refer to the Deep Dive section) -- [ ] Implement a monitoring and logging system for job execution (refer to the deep dive section) -- [ ] Fetch results from running jobs and display them to the user +- [ ] Implement a monitoring and logging system for job execution (refer to the deep dive section +- [ ] Fetch results from running jobs +- [ ] Processing output from the external script + +* stage 3 * - [ ] Implement a console preview UI for user feedback - [ ] Refactor the GN2 UI + +* stage 4 * + - [ ] Run this computation on clusters \ No newline at end of file |