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| -rw-r--r-- | topics/meetings/jnduli_bmunyoki.gmi | 41 |
1 files changed, 29 insertions, 12 deletions
diff --git a/topics/meetings/jnduli_bmunyoki.gmi b/topics/meetings/jnduli_bmunyoki.gmi index c4832c6..8afe4f1 100644 --- a/topics/meetings/jnduli_bmunyoki.gmi +++ b/topics/meetings/jnduli_bmunyoki.gmi @@ -1,22 +1,39 @@ # Meeting Notes -## 2024-10-11 -* @priscilla @flisso: Try out API endpoints that don't require auth. -* @jnduli Harden hook system for gn-auth. +## 2024-10-18 +* @priscilla @flisso: Set up mariadb and virtuoso to test out some GN3 endpoints. +* @priscilla @flisso @bmunyoki: Improve docs while hacking on the above. * @jnduli Remove gn-auth code from GN3. -* @jnduli @bonfacem Finish up RIF Editing project. -* @jnduli @alexm Create issue on describing the monitoring system. -* @jnduli @alexm Create issue on prompt engineering in GN to improve what we already have. -* @alex Work on R/Qtl. NOTE: @jnduli/@bonfacem help out with this. -* @alex: Review @bmunyoki's work on RIF/Indexing. -* @flisso: Make sure we have C Elegans dataset and MIKK genotypes to production. -* @flisso: Make sure we have HS Rats in testing stage. -* @flisso: Make progress in learning back-end coding WRT GN. +* @jnduli Resolve current issue with broken auth in gn-qa. +* @jnduli @alexm Work on the R/Qtl design doc. +* @flisso MIKK genotyping. +* @flisso Make sure we have C Elegans and HS Rats dataset to testing, and have the genotyping pipeline working. * @shelbys: Modify existing Grant write-up for pangenomes. -* @shelbys: Finish getting all the R2R scores from the first study. +* @shelbys @bonfacem: Getting RDF into R2R. * @bonfacem RIF Indexing for RIF page in Xapian. * @bonfacem Work on properly containerizing gn-guile. +## 2024-10-11 +* WIP @priscilla @flisso: Try out API endpoints that don't require auth. NOTE: Priscilla got to set-up guix channels for gn3. Felix ran into problems. Priscilla set up the MySQL in her Ubuntu system. +* NOT DONE: @jnduli Harden hook system for gn-auth. +* WIP: @jnduli Remove gn-auth code from GN3. NOTE: Sent latest patches to Fred. Running issue, some patches may have caused gn-qa to fail. +* DONE: @jnduli @bonfacem Finish up RIF Editing project. +* NOT DONE: @jnduli @alexm Create issue on describing the monitoring system. +* NOT DONE: @jnduli @alexm Create issue on prompt engineering in GN to improve what we already have. +* WIP: @alex Work on R/Qtl. NOTE: @jnduli/@bonfacem help out with this. NOTE: Finished writing the design doc for gn-qa. +* DONE: Looked at documentation for R/Qtl. +* NOT DONE: @alex: Review @bmunyoki's work on RIF/Indexing. +* WIP: @flisso: Make sure we have C Elegans dataset and MIKK genotypes to production. NOTE: Issues with data entry scripts. Fred/Zach working to set up test environment. +* WIP: @flisso: MIKK genotyping. NOTE: Still testing the pipeline. Halfway there. +* NOT DONE: @flisso: Make sure we have HS Rats in testing stage. +* WIP: @flisso: Make progress in learning back-end coding WRT GN. NOTE: Issue setting up GN3. +* WIP: @shelbys: Modify existing Grant write-up for pangenomes. NOTE: Reviewed by Pj and Eric. More mods based of feedback. Paper got accepted by BioArxiv. Added some docs to R2R evaluation code. +* DONE: @shelbys: Finish getting all the R2R scores from the first study. NOTE: Got scores for all the scores from first papers using R2R instead of Fahamu. +* NOT DONE: @bonfacem RIF Indexing for RIF page in Xapian. +* WIP: @bonfacem Work on properly containerizing gn-guile. +* DONE: @bonfacem Fix the gn-transform-database in CI. Sent patches to Arun for review. +* DONE: @bonfacem Fixed broken utf-8 characters in gn-gemtext. + ## 2024-10-04 * IN PROGRESS: @priscilla @bonfacem Setting up GN3. @priscilla try out API endpoints that don't require auth. NOTE: @priscilla Able to set up guix as a package manager. Trouble with Guix set-up with GN3. @bonfacem good opportunity to improve docs in GN3. * IN PROGRESS: @jnduli Harden hook system for gn-auth. |