diff options
| -rw-r--r-- | issues/gn-uploader/guix-build-gn-uploader-error.gmi | 105 |
1 files changed, 57 insertions, 48 deletions
diff --git a/issues/gn-uploader/guix-build-gn-uploader-error.gmi b/issues/gn-uploader/guix-build-gn-uploader-error.gmi index b0cdf33..af79a97 100644 --- a/issues/gn-uploader/guix-build-gn-uploader-error.gmi +++ b/issues/gn-uploader/guix-build-gn-uploader-error.gmi @@ -16,72 +16,81 @@ Trying to build `gn-uploader` with in my local development fails with: -> ︙ -> ice-9/boot-9.scm:1685:16: In procedure raise-exception: -> In procedure utime: No such file or directory -> builder for `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1 -> build of /gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv failed -> View build log at '/var/log/guix/drvs/i8/pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv.gz'. -> guix build: error: build of `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed +``` +︙ +ice-9/boot-9.scm:1685:16: In procedure raise-exception: +In procedure utime: No such file or directory +builder for `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1 +build of /gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv failed +View build log at '/var/log/guix/drvs/i8/pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv.gz'. +guix build: error: build of `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed +``` with the file having some of the following -> ︙ -> phase `unpack' succeeded after 48.0 seconds -> starting phase `ensure-no-mtimes-pre-1980' -> error: in phase 'ensure-no-mtimes-pre-1980': uncaught exception: -> system-error "utime" "~A" ("No such file or directory") (2) -> phase `ensure-no-mtimes-pre-1980' failed after 0.0 seconds -> Backtrace: -> 13 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj…") -> In guix/build/gnu-build-system.scm: -> 908:2 12 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) -> In ice-9/boot-9.scm: -> 1752:10 11 (with-exception-handler _ _ #:unwind? _ # _) -> ︙ +``` +︙ +phase `unpack' succeeded after 48.0 seconds +starting phase `ensure-no-mtimes-pre-1980' +error: in phase 'ensure-no-mtimes-pre-1980': uncaught exception: +system-error "utime" "~A" ("No such file or directory") (2) +phase `ensure-no-mtimes-pre-1980' failed after 0.0 seconds +Backtrace: + 13 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj…") +In guix/build/gnu-build-system.scm: + 908:2 12 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) +In ice-9/boot-9.scm: + 1752:10 11 (with-exception-handler _ _ #:unwind? _ # _) +︙ +``` Building on tux02 with the same commit raises the error -> ︙ -> ice-9/boot-9.scm:1685:16: In procedure raise-exception: -> In procedure copy-file: No space left on device -> note: build failure may have been caused by lack of free disk space -> builder for `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1 -> build of /gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv failed -> View build log at '/var/log/guix/drvs/ra/3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv.gz'. -> guix build: error: build of `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed +``` +︙ +ice-9/boot-9.scm:1685:16: In procedure raise-exception: +In procedure copy-file: No space left on device +note: build failure may have been caused by lack of free disk space +builder for `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1 +build of /gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv failed +View build log at '/var/log/guix/drvs/ra/3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv.gz'. +guix build: error: build of `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed +``` with the error file containing -> ︙ -> `/gnu/store/h0zywgd0i8m6ssnyq5ngx34r1c26a65s-git-checkout/tests/test_data/standarderror_1_error_at_end.tsv' -> `./tests/test_data/standarderror_1_erro -> r_at_end.tsv' -> error: in phase 'unpack': uncaught exception: -> system-error "copy-file" "~A" ("No space left on device") (28) -> phase `unpack' failed after 2.8 seconds -> Backtrace: -> 17 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj<E2><80><A6>") -> In guix/build/gnu-build-system.scm: -> 908:2 16 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) -> In ice-9/boot-9.scm: -> ︙ -> ice-9/boot-9.scm:1685:16: In procedure raise-exception: -> In procedure copy-file: No space left on device +``` +︙ +`/gnu/store/h0zywgd0i8m6ssnyq5ngx34r1c26a65s-git-checkout/tests/test_data/standarderror_1_error_at_end.tsv' -> `./tests/test_data/standarderror_1_error_at_end.tsv' +error: in phase 'unpack': uncaught exception: +system-error "copy-file" "~A" ("No space left on device") (28) +phase `unpack' failed after 2.8 seconds +Backtrace: + 17 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj<E2><80><A6>") +In guix/build/gnu-build-system.scm: + 908:2 16 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) +In ice-9/boot-9.scm: +︙ +ice-9/boot-9.scm:1685:16: In procedure raise-exception: +In procedure copy-file: No space left on device +``` There is plenty of space on the tux02: -> $ df -h /gnu /tmp -> Filesystem Size Used Avail Use% Mounted on -> /dev/nvme1n1p5 117G 82G 29G 74% /gnu -> /dev/nvme1n1p2 30G 26G 2.1G 93% / +``` +$ df -h /gnu /tmp +Filesystem Size Used Avail Use% Mounted on +/dev/nvme1n1p5 117G 82G 29G 74% /gnu +/dev/nvme1n1p2 30G 26G 2.1G 93% / +``` so we know that's not a problem. A similar thing had shown up on space.uthsc.edu. -### Troubleshooting Efforts +### More Troubleshooting Efforts -I have attempted checking out +I have even attempted checking out => https://git.genenetwork.org/guix-bioinformatics/commit/?h=fred-updates-20240313&id=869598d39a532c6acc83bb0b9d21baaa79476973 commit 869598d39a532c6acc83bb0b9d21baaa79476973 and creating a branch from it then => https://git.genenetwork.org/guix-bioinformatics/commit/?h=fred-updates-20240313&id=4105a3e463982f46dcc9a537267fb77bb2322b9a updating the commit and hash |