diff options
| -rw-r--r-- | issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi | 2 | ||||
| -rw-r--r-- | issues/gemma/gemma-wrapper-has-incomplete-files.gmi | 2 |
2 files changed, 4 insertions, 0 deletions
diff --git a/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi b/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi index 23ad3e5..fdb6a98 100644 --- a/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi +++ b/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi @@ -91,3 +91,5 @@ GSL ERROR: function value is not finite in newton.c at line 88 errno 9 ``` @hrwang had a good suggestion to make sure that the output for the SNP is made invalid and to continue processing. Disabling the error handler let GEMMA continue. I added a check for the status flag to make sure output was set to invalid (nan). In the test set 178 out of 72732 SNPs failed. + +* closed diff --git a/issues/gemma/gemma-wrapper-has-incomplete-files.gmi b/issues/gemma/gemma-wrapper-has-incomplete-files.gmi index d530fb4..185c5d4 100644 --- a/issues/gemma/gemma-wrapper-has-incomplete-files.gmi +++ b/issues/gemma/gemma-wrapper-has-incomplete-files.gmi @@ -40,3 +40,5 @@ One solution is to write a lock file using the inputs as a hash. The lock file c I added the same code to replace sheepdog locks. Sheepdog is running every minute on our machines so it is a great test case. => https://github.com/pjotrp/deploy/commit/4790b81ee897c8244280169edb3cac751eb0a9b3 sheepdog locking + +* closed |