diff options
| -rw-r--r-- | tasks/machine-room.gmi | 35 | ||||
| -rw-r--r-- | tasks/pjotrp.gmi | 54 |
2 files changed, 38 insertions, 51 deletions
diff --git a/tasks/machine-room.gmi b/tasks/machine-room.gmi new file mode 100644 index 0000000..9d520e4 --- /dev/null +++ b/tasks/machine-room.gmi @@ -0,0 +1,35 @@ +# Machine room tasks + +## Tags + +* assigned: pjotrp +* priority: medium +* type: system administration +* keywords: system administration, octopus, gateway, tux02, tux01, tux03 + +## Tasks + +* [ ] get data from summer211.uthsc.edu (access machine room) +* [ ] decommission out-racked machines (whith @arthurc) +* [ ] space server out-of-band +* [ ] tux01 has unused 4TB spinning disk +* [ ] tux02 has unused 2x4TB spinning disks and 2TB nvme /dev/nvme0n1 on adapter + https://www.cyberciti.biz/faq/upgrade-update-samsung-ssd-firmware/ + apt-get install fwupd fwupdate + fwupdmgr get-devices + fwupdmgr update + The previously problematic Samsung 980 Pro was basically using the 3B2QGXA7, and now Samsung has introduced a new 5B2QGXA7 firmware to fix the problem. The problem mainly affects the 2TB version of the 980 Pro +* [ ] Automate tux01 restart for GN2+GN3 services +* [ ] Check backups of etc etc. +* [ ] Install tux04 and tux05 +* [ ] Tux01 and Tux02 disk space issues +* [ ] connect 10Gbs to tux01(?) - needs to be a new IP +* [ ] VPN access and FoUT +* [+] Reinstate backup drops on tux02, rabbit, &space and &epysode; reduce incoming IP +* [ ] Update mars (fallback machine) also for development +* [ ] Pluto tool with Zach & Efraim +* [+] run sheepdog as root: redis password error; introduce SHEEPDOG_CONF +* [ ] DMZ plan +* [X] Order drives and caddies tux01 & tux02 (with @haoc) +* [X] Introduce &disk space and mdstat monitor +* [X] Machine room HDDs diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi index 5aeeafb..85523c0 100644 --- a/tasks/pjotrp.gmi +++ b/tasks/pjotrp.gmi @@ -21,6 +21,8 @@ Now * [+] Shelby's application * [.] Check Tony's list and improve search for SNPs and Hs * [.] GeneNetwork paper +* [ ] GEMMA/bulklmm speedups +* [ ] RISC-V Later @@ -28,47 +30,20 @@ Later * [+] Machine room security and access for bonz, fred, shelby, others... * [ ] Hao's idea for counting cis-qtl * [ ] Batch run GEMMA and faster file handling -* [ ] Run any2any alignments of pathogens * [ ] Improve search for significant and suggestive hits -* [ ] GEMMA speedups -* [ ] Aging studies -* [ ] RISC-V * [+] DOI support GN (Paris) -* [ ] Automate tux01 restart for GN2+GN3 services -* [ ] tux01 has unused 4TB spinning disk -* [ ] tux02 has unused 2x4TB spinning disks and 2TB nvme /dev/nvme0n1 on adapter - https://www.cyberciti.biz/faq/upgrade-update-samsung-ssd-firmware/ - apt-get install fwupd fwupdate - fwupdmgr get-devices - fwupdmgr update - The previously problematic Samsung 980 Pro was basically using the 3B2QGXA7, and now Samsung has introduced a new 5B2QGXA7 firmware to fix the problem. The problem mainly affects the 2TB version of the 980 Pro ### Ongoing tasks -=> ./dana.gmi See Dan's list for machine room +=> ./machine-room.gmi machine room -* [ ] get data from summer211.uthsc.edu (access machine room) -* [ ] decommission out-racked machines (whith @arthurc) -* [ ] space server out-of-band * [ ] Frontend for GN4MSK -* [ ] Check backups of etc etc. * [ ] GeneNetwork consortium -* [ ] Install tux04 and tux05 * + [ ] Order storage and caddies * + [ ] See about network adapters and support -* [ ] Tux01 and Tux02 disk space issues -* [ ] connect 10Gbs to tux01(?) - needs to be a new IP -* [ ] VPN access and FoUT -* [ ] Setup VM on Tux02 * [ ] Key 410H * [ ] research.gov submit Postdoc plan * [+] Complete vcflib work in Zig and release -* [+] Reinstate backup drops on tux02, rabbit, &space and &epysode; reduce incoming IP -* [+] Guix and Julia with Gregory -* [ ] Check Adrian's compiler w. odgi -* [ ] Update mars (fallback machine) also for development -* [ ] Pluto tool with Zach & Efraim -* [+] run sheepdog as root: redis password error; introduce SHEEPDOG_CONF * [ ] Fix issues: => https://genenetwork.org/show_trait?trait_id=10441&dataset=HSNIH-PalmerPublish slow mapping => http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=2 @@ -76,27 +51,4 @@ Later => ../issues/genenetwork1/gn1-production-system-issues.gmi * [ ] fix GN1 images linking to http://www.webqtl.org/array_images/S238-1F1-U74Av2.png -### Maybe never - -* [ ] DMZ plan - ### Done - -* [X] Order drives and caddies tux01 & tux02 (with @haoc) -* [X] Introduce &disk space and mdstat monitor -* [X] Machine room HDDs -* [X] NSF report with UTHSC -* [X] Write test for R/qtl, GEMMA and other mapping -* [X] Fix https on tux01 -* [X] Fix Lily edit form -=> http://gn1.genenetwork.org/infoshare/manager/member-studies-edit.html?DatasetId=101 -* [X] Opar.io move to dnsimple -* [X] Run tux01 backups serially -* [X] Add tux02 to rabbit's sheepdog -* [X] Get status list from sheepdog on epysode, tux02 and rabbit on GN2 -* [X] Add accounts Erik, Andrea, Hao to P2 -* [X] Add accounts Bonz, Fred, Alex to tux02 -* [X] Restart luna -* [X] Fix genecup errors (with @efraimf) -* [X] Copy database to space (space3 dir) (@arthurc) -* [X] Output sheepdog monitor |