diff options
| -rw-r--r-- | topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi b/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi index bea482d..00bd8dd 100644 --- a/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi +++ b/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi @@ -29,12 +29,12 @@ You can find the `lmdb_matrix.py` script here: guix shell python-click python-lmdb python-wrapper python-numpy -- \ python lmdb_matrix.py import-genotype \ <path-to-genotype-file> <path-to-lmdb-store> -```` +``` ## Dumping the Cross Metadata The script can be found here: -\=> [https://github.com/genenetwork/genenetwork3/pull/235/files](https://github.com/genenetwork/genenetwork3/pull/235/files) # lmdb\_cross\_metadata.py +=> https://github.com/genenetwork/genenetwork3/pull/235/files # lmdb_cross_metadata.py You need to provide a cross file path. The currently supported formats are JSON and YAML. @@ -44,7 +44,7 @@ Example: guix shell python-click python-lmdb python-wrapper python-pyyaml -- \ python dump_metadata.py dump-cross [LMDB_PATH] [CROSS_FILE_PATH] --file-format yaml/json -# or +# Example python dump_metadata.py dump-cross "./test_lmdb_data" "./cross_file.json" ``` |