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authorPjotr Prins2023-08-24 12:56:17 +0200
committerPjotr Prins2023-08-24 12:56:17 +0200
commitc9a7b7f61a570b0ec937f7c434ada73df2cebe9e (patch)
treea1252a0d8cd582b2168146b6a9cc539edcc9e625 /topics
parent2e6c56c4afd30e42b7932baf69d8e7703a43f639 (diff)
downloadgn-gemtext-c9a7b7f61a570b0ec937f7c434ada73df2cebe9e.tar.gz
GNSoc update
Diffstat (limited to 'topics')
-rw-r--r--topics/biohackathon/GNGSoC2023.gmi33
1 files changed, 31 insertions, 2 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
index 2ede8f7..23b12f8 100644
--- a/topics/biohackathon/GNGSoC2023.gmi
+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -72,6 +72,11 @@ git repo genenetwork-machines, guix-bioinformatics
* cgit deployment at https://git.genenetwork.org/
* guix forge
+### Week 9
+
+* Discussion on importers for guix forge
+* Talked about propagator networks - part of Seattle presentation
+
### More
=> https://ci.genenetwork.org/jobs/guix-bioinformatics
@@ -140,6 +145,13 @@ git repo genenetwork3
* Transformed most tables now
* guile-lmdb started by Alex
+### Week 9
+
+* New renaming and modelling
+* GeneRif
+* Working on unique IDs
+* SKOS
+
## LLMs & metadata (RDF)
* lead: Shelby
@@ -193,6 +205,11 @@ git repo genenetwork3
* Working prototype!
* references as JSON
+### Week 9
+
+* Shelby showed working references and challenges
+* System is ready for viewing by Rob
+
## API to access data from GN
* lead: Rupert
@@ -253,8 +270,12 @@ git repo gn-docs & genenetwork3 & SPARQL
### Week 8
-- R script to parse API by Rupert
-- Move forward with populations/strains and datasets
+* R script to parse API by Rupert
+* Move forward with populations/strains and datasets
+
+### Week 9
+
+* Progressed API software to include groups
## Editing data
@@ -294,6 +315,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* gn-auth is building locally and needs to go on the forge
* case attributes
+### Week 9
+
+* gn-auth continuation
+* case-attribute editing progress and challenges
## Guix parametrization
@@ -336,6 +361,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* Milestone on dependencies!
+### Week 9
+
+* Sarthak showed us the working prototype
+
## Links
* Matrix room is GNSoC2023