Tag and Prioritise more issues

46 files changed, 287 insertions, 21 deletions

diff --git a/topics/arvados/covid19.gmi b/topics/arvados/covid19.gmi
index be96605..48bd028 100644
--- a/topics/arvados/covid19.gmi
+++ b/topics/arvados/covid19.gmi
@@ -5,3 +5,11 @@ We are setting up a Cloud HPC for COVID-19 using Arvados as the underlying infra
 ## Tasks
 
 => https://github.com/yatisht/usher Fast phylogeny
+
+## Tags
+
+* assigned: pjotrp
+* priority: unclear
+* type: system administration
+* status: unclear
+* keywords: covid-19, systems, arvados
diff --git a/topics/authentication/replace-hard-coded-auth-with-gn-proxy.gmi b/topics/authentication/replace-hard-coded-auth-with-gn-proxy.gmi
index f066399..05ccb53 100644
--- a/topics/authentication/replace-hard-coded-auth-with-gn-proxy.gmi
+++ b/topics/authentication/replace-hard-coded-auth-with-gn-proxy.gmi
@@ -2,9 +2,14 @@
 
 ## Tags
 
-* assigned: ??
+* assigned: bonfacem
 * priority: medium
-* status: unclear
+* type: enhancement
+* status: in progress
 * keywords: authentication, gn-proxy
 
 ## Description
+
+Originally in the now deleted file `topics/authentication/auth.gmi` which was originally created by BonfaceKilz.
+
+Assigned to bonfacem for better description, and further work/reassignment as appropriate
diff --git a/topics/authentication/user-info.gmi b/topics/authentication/user-info.gmi
index c5723af..6a1bc33 100644
--- a/topics/authentication/user-info.gmi
+++ b/topics/authentication/user-info.gmi
@@ -4,7 +4,8 @@ When the user signs in to GN2, there is no info on the account name in the menu.
 
 ## Tags
 
-* assigned: ??
+* assigned: bonfacem
 * priority: medium
 * status: unclear
+* type: bug
 * keywords: authentication, user info
diff --git a/topics/cli/weechat.gmi b/topics/cli/weechat.gmi
index b6fc062..337f3c9 100644
--- a/topics/cli/weechat.gmi
+++ b/topics/cli/weechat.gmi
@@ -1,5 +1,10 @@
 # Weechat
 
+## Tags
+
+* type: documentation
+* keywords: cli, weechat, documentation
+
 Weechat is a very versatile terminal chat that can handle IRC, Matrix and Slack.
 
 ## Weechat install + slack
diff --git a/topics/data-uploads/inserting-data.gmi b/topics/data-uploads/inserting-data.gmi
index 33b500c..5c79808 100644
--- a/topics/data-uploads/inserting-data.gmi
+++ b/topics/data-uploads/inserting-data.gmi
@@ -1,6 +1,12 @@
+# Data Uploads: Inserting Data
+
 ## Tags
 
 * assigned: bonfacem, zachs
+* type: bug
+* priority: high
+* status: in progress
+* keywords: data uploads
 
 ### Introduction
 
@@ -160,4 +166,4 @@ MariaDB [db_webqtl]> select * from Strain where Id=66086;
 
 - There are 1000s of mice with computable genomes that have never been
   born yet.  Can we compute their phenotype?  This is as difficult as
-  getting to Mars.
\ No newline at end of file
+  getting to Mars.
diff --git a/topics/data-uploads/reverse-from-file.gmi b/topics/data-uploads/reverse-from-file.gmi
index f7eb028..9e368db 100644
--- a/topics/data-uploads/reverse-from-file.gmi
+++ b/topics/data-uploads/reverse-from-file.gmi
@@ -1,8 +1,13 @@
+# Data Uploads: Reversing a Diff
+
 ## Tags
 
 * assigned: bonfacem, zachs
+* status: unclear
+* type: enhancement
+* priority: high
+* keywords: data uploads
 
 ### Introduction
 
-Given a diff file, we should be able to reverse the operations that
-were ran on it.
+Given a diff file, we should be able to reverse the operations that were ran on it.
diff --git a/topics/documentation/gn-documentation.gmi b/topics/documentation/gn-documentation.gmi
index 653a1a4..9cf729d 100644
--- a/topics/documentation/gn-documentation.gmi
+++ b/topics/documentation/gn-documentation.gmi
@@ -13,6 +13,10 @@ the markdown is rendered on github, which makes it easy to edit for most users,
 ## Tags
 
 * assigned: pjotrp
+* status: unclear
+* type: documentation
+* priority: high
+* keywords: documentation, wiki
 
 ## Tasks
 
diff --git a/topics/documentation/gn-hacking-documentation.gmi b/topics/documentation/gn-hacking-documentation.gmi
index 93898b2..60b34a3 100644
--- a/topics/documentation/gn-hacking-documentation.gmi
+++ b/topics/documentation/gn-hacking-documentation.gmi
@@ -11,6 +11,10 @@ The goal of this document is to encourage and track the documentation that assis
 ## Tags
 
 * assigned: fredm
+* type: documentation
+* status: in progress
+* priority: medium
+* keywords: traits, datasets, hacking
 
 
 ## Unifying Principles
diff --git a/topics/gemini/cheatsheet.gmi b/topics/gemini/cheatsheet.gmi
index b2158ea..58b4000 100644
--- a/topics/gemini/cheatsheet.gmi
+++ b/topics/gemini/cheatsheet.gmi
@@ -3,3 +3,8 @@
 => gemini://gemini.circumlunar.space/docs/cheatsheet.gmi
 
 => https://gemini.circumlunar.space/docs/cheatsheet.gmi proxy
+
+## Tags
+
+* type: documentation
+* keywords: gemini
diff --git a/topics/gemini/ideas_and_references.gmi b/topics/gemini/ideas_and_references.gmi
index dfb026d..d28f85c 100644
--- a/topics/gemini/ideas_and_references.gmi
+++ b/topics/gemini/ideas_and_references.gmi
@@ -1,3 +1,8 @@
-Ideas and References
+# Ideas and References
 
 => gemini://drewdevault.com/2021/11/15/Reframing-gemini.gmi Reframing the philosophy of Gemini
+
+## Tags
+
+* type: documentation
+* keywords: documentation, gemini
diff --git a/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi b/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi
index 0fbdabc..e87628f 100644
--- a/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi
+++ b/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi
@@ -19,5 +19,6 @@ During the presentation meeting on 2021-10-01, Rob requested that the heatmaps h
 
 ## Tags
 
-* feature
+* type: feature-request
 * assigned: fredm, zsloan
+* status: closed, completed
diff --git a/topics/gn1-migration-to-gn2/partial-correlations.gmi b/topics/gn1-migration-to-gn2/partial-correlations.gmi
index 8ddb783..ceba819 100644
--- a/topics/gn1-migration-to-gn2/partial-correlations.gmi
+++ b/topics/gn1-migration-to-gn2/partial-correlations.gmi
@@ -27,7 +27,10 @@ That gives you a list of hits.
 ## Tags
 
 * assigned: fredm, zsloan, robw
-* migration, in progress, deployed, under test
+* keywords: migration, partial correlations, GN3, GN1
+* status: in progress, deployed, under test
+* type: feature-migration
+* priority: medium
 
 ## Notes
 
diff --git a/topics/lisp/common-lisp-notes.gmi b/topics/lisp/common-lisp-notes.gmi
index eca6c3d..cf48013 100644
--- a/topics/lisp/common-lisp-notes.gmi
+++ b/topics/lisp/common-lisp-notes.gmi
@@ -1,34 +1,40 @@
-# List of common lisp packages:
+# Common LISP: Notes
+
+## List of common lisp packages:
 
 => https://github.com/CodyReichert/awesome-cl
 
-# Books
+## Books
 
 http://cliki.net/Lisp+Books
 
-# Practice
+## Practice
 
 https://github.com/google/lisp-koans
 https://exercism.io/tracks/common-lisp
 
-# Documentation
+## Documentation
 
 The nonguix channel provides an emacs package for the Common Lisp HyperSpec:
 
 => https://gitlab.com/nonguix/nonguix/-/blob/master/nongnu/packages/emacs.scm#L26 clhs
 
-# Getting Help / Asking Questions
+## Getting Help / Asking Questions
 
-## Libera Chat
+### Libera Chat
 
 ```
 #clschool
 #commonlisp
 ```
 
-## Matrix
+### Matrix
 
 ```
 #common-lisp:matrix.org
 ```
 
+## Tags
+
+* type: documentation
+* keywords: LISP, common-lisp, packages
diff --git a/topics/lisp/common-lisp-sly.gmi b/topics/lisp/common-lisp-sly.gmi
index e69de29..494d821 100644
--- a/topics/lisp/common-lisp-sly.gmi
+++ b/topics/lisp/common-lisp-sly.gmi
@@ -0,0 +1,12 @@
+# Common LISP: sly
+
+This document will collect some resources on sly
+
+## Tags
+
+* type: documentation
+* keywords: common-lisp, sly, emacs
+
+## Resources
+
+=> https://joaotavora.github.io/sly/ SLY User Manual
diff --git a/topics/lisp/debugging.gmi b/topics/lisp/debugging.gmi
index a3565c6..2945e0c 100644
--- a/topics/lisp/debugging.gmi
+++ b/topics/lisp/debugging.gmi
@@ -7,3 +7,8 @@ Some links
 
 => https://malisper.me/debugging-lisp-part-1-recompilation/ Debug Common Lisp (CL)
 => https://www.youtube.com/watch?v=bl8jQ2wRh6k Video on CL web development
+
+## Tags
+
+* type: documentation
+* keywords: LISP, debugging
diff --git a/topics/lisp/define-condition.gmi b/topics/lisp/define-condition.gmi
index 59d3f56..e6891d6 100644
--- a/topics/lisp/define-condition.gmi
+++ b/topics/lisp/define-condition.gmi
@@ -72,3 +72,9 @@ Why is condition handling special in common lisp compared to other languages?
 => https://lispcookbook.github.io/cl-cookbook/error_handling.html define-condition in the cl-cookbook
 => https://www.nhplace.com/kent/Papers/Condition-Handling-2001.html Condition Handling in the Lisp Language Family
 => https://gigamonkeys.com/book/beyond-exception-handling-conditions-and-restarts.html Conditions and Restarts
+
+
+## Tags
+
+* type: documentation
+* keywords: LISP, condition handling
diff --git a/topics/lisp/lisp4schemers.gmi b/topics/lisp/lisp4schemers.gmi
index f0ee1af..a385890 100644
--- a/topics/lisp/lisp4schemers.gmi
+++ b/topics/lisp/lisp4schemers.gmi
@@ -1,5 +1,10 @@
 # Lisp For Schemers
 
+## Tags
+
+* type: documentation
+* keywords: LISP, Scheme, iota, loop, iterate
+
 ## iota
 
 ### In Scheme
diff --git a/topics/lisp/tips-and-tricks.gmi b/topics/lisp/tips-and-tricks.gmi
index 792980b..024d865 100644
--- a/topics/lisp/tips-and-tricks.gmi
+++ b/topics/lisp/tips-and-tricks.gmi
@@ -14,3 +14,8 @@ CL-USER(3): (+ 3 #;(+ 2 3) 1)
 ```
 
 Special thanks to Ed Langley on #common-lisp:matrix.org.
+
+## Tags
+
+* type: documentation
+* keywords: lisp, scheme, tips, tricks
diff --git a/topics/notebooks/binderlite-cli.gmi b/topics/notebooks/binderlite-cli.gmi
index fede6f4..81e6db8 100644
--- a/topics/notebooks/binderlite-cli.gmi
+++ b/topics/notebooks/binderlite-cli.gmi
@@ -1,5 +1,13 @@
 # CLI Features
 
+## Tags
+
+* assigned: jgart
+* priority: low
+* status: unclear
+* type: feature-request
+* keywords: bindelite, notebooks
+
 ## Admin
 
 * Clear Database
diff --git a/topics/notebooks/reproducibility.gmi b/topics/notebooks/reproducibility.gmi
index 8d565a1..7219539 100644
--- a/topics/notebooks/reproducibility.gmi
+++ b/topics/notebooks/reproducibility.gmi
@@ -14,3 +14,9 @@ https://github.com/fonsp/Pluto.jl#built-in-package-manager
 
 https://mybinder.readthedocs.io/en/latest/tutorials/reproducibility.html#pin-dependencies
 
+## Tags
+
+* type: documentation
+* priority: medium
+* assigned: jgart
+* keywords: documentation, notebooks, reproducibility, guix
diff --git a/topics/profiling_python_code.gmi b/topics/profiling_python_code.gmi
index d7f9ea0..9052364 100644
--- a/topics/profiling_python_code.gmi
+++ b/topics/profiling_python_code.gmi
@@ -20,3 +20,9 @@ The output can be redirected, e.g.
 * env [various-env-vars] python3 -m cProfile the-script.py 2>error.log 1>performance.log
 
 which should help will separating errors from the performance data, for easier analysis
+
+
+## Tags
+
+* type: documentation
+* keywords: profiling, python
diff --git a/topics/pudb/pytest-pudb.gmi b/topics/pudb/pytest-pudb.gmi
index 5a979c0..4a9b685 100644
--- a/topics/pudb/pytest-pudb.gmi
+++ b/topics/pudb/pytest-pudb.gmi
@@ -5,3 +5,8 @@ pytest --pdbcls pudb.debugger:Debugger --pdb --capture=no
 ```
 
 => https://documen.tician.de/pudb/starting.html?highlight=pytest#usage-with-pytest 
+
+## Tags
+
+* type: documentation
+* keywords: pudb, pytest
diff --git a/topics/pudb/using-pudb.gmi b/topics/pudb/using-pudb.gmi
index 877a700..7cac743 100644
--- a/topics/pudb/using-pudb.gmi
+++ b/topics/pudb/using-pudb.gmi
@@ -19,3 +19,8 @@ The standard pdb docs should work for pudb with one small exception.
 > exception: run is called runstatement.)
 
 => https://docs.python.org/3/library/pdb.html?highlight=pdb#module-pdb
+
+## Tags
+
+* type: documentation
+* keywords: pudb
diff --git a/topics/quality-control/qc-checks.gmi b/topics/quality-control/qc-checks.gmi
index 0d04625..dc18f94 100644
--- a/topics/quality-control/qc-checks.gmi
+++ b/topics/quality-control/qc-checks.gmi
@@ -45,3 +45,11 @@ is allowed into the GeneNetwork will be 22,000 entries.
 12. Check for CRLF.
 
 13. Check for UTF-8 encoding.
+
+## Tags
+
+* assigned: jgart
+* type: feature-request
+* priority: high
+* status: unclear
+* keywords: quality control
diff --git a/topics/quality-control/qc.gmi b/topics/quality-control/qc.gmi
index 96c4604..7b5d1e4 100644
--- a/topics/quality-control/qc.gmi
+++ b/topics/quality-control/qc.gmi
@@ -31,3 +31,11 @@ Note we could run QC through the REST API too. That would allow it to
 be run from R and Python and Jupyter notebooks. Make it part of GN3.
 
 The tricky part is still how the data is handled in escrow.
+
+## Tags
+
+* assigned: jgart
+* priority: high
+* type: feature-request
+* status: in progress, beta
+* keywords: quality control
diff --git a/topics/quality-control/shapiro-wilk-test.gmi b/topics/quality-control/shapiro-wilk-test.gmi
index b1bdbfd..352dc5b 100644
--- a/topics/quality-control/shapiro-wilk-test.gmi
+++ b/topics/quality-control/shapiro-wilk-test.gmi
@@ -31,3 +31,8 @@ perform Ordered Quantile normalization43 on all phenotypes. QTL
 --
 A quantitative trait variant in Gabra2 underlies increased methamphetamine stimulant sensitivity
 ```
+
+## Tags
+
+* type: documentation
+* keywords: documentation, Shapiro Wilk test
diff --git a/topics/quality-control/ui-design.gmi b/topics/quality-control/ui-design.gmi
index 84f7748..029a2b8 100644
--- a/topics/quality-control/ui-design.gmi
+++ b/topics/quality-control/ui-design.gmi
@@ -39,3 +39,11 @@ dataset so that we can inspect it."
 "Inbred Set ID 1 is the same as BXD"
 
 > These are the strains: ...
+
+## Tags
+
+* assigned: jgart
+* type: feature-request
+* status: unclear
+* priority: medium
+* keywords: UI, quality control
diff --git a/topics/running_pudb_from_external_environment.gmi b/topics/running_pudb_from_external_environment.gmi
index be9bf14..a533e22 100644
--- a/topics/running_pudb_from_external_environment.gmi
+++ b/topics/running_pudb_from_external_environment.gmi
@@ -1,5 +1,7 @@
 # Running pudb From an External Environment
 
+This documentation is now obsolete since pudb was added as a package in GNU Guix
+
 Currently (22nd December 2021), it is a tad difficult to get pudb running under the various guix environments without having to update a lot of stuff. This documents a workaround that seems to work for me (@fredm).
 
 ## GeneNetwork3
@@ -20,3 +22,9 @@ Currently (22nd December 2021), it is a tad difficult to get pudb running under
 4) Inside the container, run the debugger with something like:
 
 * env PYTHONPATH="${PYTHONPATH}:${HOME}/pudb_env/lib/python3.8/site-packages" ... python3 -m pudb script.py
+
+## Tags
+
+* type: documentation
+* keywords: pudb
+* status: obsolete
diff --git a/topics/systems/bbb.gmi b/topics/systems/bbb.gmi
index 9ef54a3..73582e6 100644
--- a/topics/systems/bbb.gmi
+++ b/topics/systems/bbb.gmi
@@ -1,4 +1,9 @@
-# BBB
+# BigBlueButton
+
+## Tags
+
+* type: documentation
+* keywords: BigBlueButton
 
 ## BASH script to install BigBlueButton in 30 minutes. 
 
diff --git a/topics/systems/ci-cd.gmi b/topics/systems/ci-cd.gmi
index cc12069..a5e00b6 100644
--- a/topics/systems/ci-cd.gmi
+++ b/topics/systems/ci-cd.gmi
@@ -13,7 +13,10 @@ deployment cycle to help with quick iteration of the code.
 ## Tags
 
 * assigned: bonfacem, fredm, efraimf, aruni
-* deployment
+* keywords: deployment, CI, CD, testing
+* status: in progress
+* priority: high
+* type: enhancement
 
 ## Tasks
 
diff --git a/topics/systems/decommission-machines.gmi b/topics/systems/decommission-machines.gmi
index 92614ad..496f23f 100644
--- a/topics/systems/decommission-machines.gmi
+++ b/topics/systems/decommission-machines.gmi
@@ -3,6 +3,10 @@
 # Tags
 
 * assigned: pjotrp, arthurc, dana
+* priority: high
+* keywords: systems
+* type: system administration
+* status: unclear
 
 # Tasks
 
diff --git a/topics/systems/gn1-time-machines.gmi b/topics/systems/gn1-time-machines.gmi
index 1154a5e..0029016 100644
--- a/topics/systems/gn1-time-machines.gmi
+++ b/topics/systems/gn1-time-machines.gmi
@@ -39,6 +39,10 @@ so you can see all the different versions. The matching code bases should be the
 ## Tags
 
 * assigned: pjotrp, efraimf
+* priority: high
+* status: unclear
+* type: system administration
+* keywords: systems
 
 ## Tasks
 
diff --git a/topics/systems/letsencrypt.gmi b/topics/systems/letsencrypt.gmi
index feb4f48..bafae55 100644
--- a/topics/systems/letsencrypt.gmi
+++ b/topics/systems/letsencrypt.gmi
@@ -3,7 +3,9 @@
 ## Tags
 
 * assigned: pjotr
-* bug
+* type: bug
+* priority: critical
+* status: completed, done, closed
 
 ## Tasks
 
diff --git a/topics/systems/machine-room.gmi b/topics/systems/machine-room.gmi
index d75883a..28d9921 100644
--- a/topics/systems/machine-room.gmi
+++ b/topics/systems/machine-room.gmi
@@ -3,6 +3,10 @@
 ## Tags
 
 * assign: pjotrp, dana
+* type: system administration
+* priority: high
+* keywords: systems
+* status: unclear
 
 ## Tasks
 
diff --git a/topics/systems/mariadb/ProbeData.gmi b/topics/systems/mariadb/ProbeData.gmi
index b613784..c339571 100644
--- a/topics/systems/mariadb/ProbeData.gmi
+++ b/topics/systems/mariadb/ProbeData.gmi
@@ -1,4 +1,14 @@
+# ProbeData
 
+## Tags
+
+* assigned: pjotrp, aruni
+* status: unclear
+* priority: medium
+* type: enhancement
+* keywords: database, mariadb, innodb, ProbeData
+
+## Description
 
 Probe level data is used to examine the correlation structure among the
 N probes that have the same nominal target. Sometimes several probes
diff --git a/topics/systems/mariadb/ProbeSE.gmi b/topics/systems/mariadb/ProbeSE.gmi
index f9aa670..2c36514 100644
--- a/topics/systems/mariadb/ProbeSE.gmi
+++ b/topics/systems/mariadb/ProbeSE.gmi
@@ -1,3 +1,15 @@
+# ProbeSE
+
+## Tags
+
+* assigned: pjotrp
+* status: unclear
+* priority: medium
+* type: enhancement
+* keywords: database, mariadb, innodb, ProbeSE
+
+## Description
+
 Zach pointed out that ProbeSE is used on GN1 with
 
 => http://gn1.genenetwork.org/webqtl/main.py?FormID=showProbeInfo&database=HC_M2_0606_P&ProbeSetID=1427571_at&CellID=None&RISet=BXD&incparentsf1=ON
diff --git a/topics/systems/mariadb/ProbeSetData.gmi b/topics/systems/mariadb/ProbeSetData.gmi
index 63e7912..672b64c 100644
--- a/topics/systems/mariadb/ProbeSetData.gmi
+++ b/topics/systems/mariadb/ProbeSetData.gmi
@@ -1,5 +1,15 @@
 # ProbeSetData
 
+## Tags
+
+* assigned: pjotrp
+* status: unclear
+* priority: medium
+* type: enhancement
+* keywords: database, mariadb, innodb
+
+## Description
+
 This is by far the largest table (~200Gb). I need to add disk space to be able to host it on the NVME and move stuff around. Final move is GN2 code and we have over 400Gb free.
 
 This time I failed porting to InnoDB. Next time:
diff --git a/topics/systems/mariadb/ProbeSetXRef.gmi b/topics/systems/mariadb/ProbeSetXRef.gmi
index d8981a5..cdf08f4 100644
--- a/topics/systems/mariadb/ProbeSetXRef.gmi
+++ b/topics/systems/mariadb/ProbeSetXRef.gmi
@@ -1,3 +1,13 @@
+# ProbeSetXRef
+
+## Tags
+
+* keywords: ProbeSetXRef, database, mariadb, innodb
+* type: enhancement, documentation
+* assigned: pjotrp
+* status: unclear
+* priority: medium
+
 ## Table ProbeSetXRef
 
 Juggling indexes and transforming to InnoDB led to a massive speed increase for typical ProbeSetXRef queries. Global search for brca2 went down from 13s to 4s! Try
diff --git a/topics/systems/mariadb/cleanup.gmi b/topics/systems/mariadb/cleanup.gmi
index c034fbc..0639e40 100644
--- a/topics/systems/mariadb/cleanup.gmi
+++ b/topics/systems/mariadb/cleanup.gmi
@@ -1,4 +1,14 @@
+# Clean Up
 
+## Tags
+
+* assigned: pjotrp, robw
+* status: unclear
+* priority: unclear
+* type: database administration
+* keywords: database, mariadb
+
+## Description
 
 Find all larger tables
 
diff --git a/topics/systems/mariadb/mariadb.gmi b/topics/systems/mariadb/mariadb.gmi
index c2c927b..0cbd0e7 100644
--- a/topics/systems/mariadb/mariadb.gmi
+++ b/topics/systems/mariadb/mariadb.gmi
@@ -4,7 +4,8 @@ Here we capture some common actions
 
 ## Tags
 
-* info
+* type: info, documentation
+* keywords: mariadb, systems
 
 ## Check the transaction logs
 
diff --git a/topics/systems/mariadb/move-to-innodb.gmi b/topics/systems/mariadb/move-to-innodb.gmi
index b29173e..134a50a 100644
--- a/topics/systems/mariadb/move-to-innodb.gmi
+++ b/topics/systems/mariadb/move-to-innodb.gmi
@@ -1,3 +1,5 @@
+# MariaDB: Move to InnoDB Engine
+
 We are going to move from myisam to innodb. Penguin2 has been happily running innodb for some time.
 
 Main problem are fulltext columns, the text from Trello is captured below. This is for the following tables
@@ -581,3 +583,12 @@ On Penguin2 we are already runing ProbeSetData as
 ```
 
 which is pretty massive! It includes the index, which is 180G, so the difference is not that great. Also we should try a 4kb page size. Also make sure to enable innodb_file_per_table.
+
+
+## Tags
+
+* assigned: pjotr
+* type: enhancement, documentation
+* status: unclear
+* priority: medium
+* keywords: database, mariadb, innodb
diff --git a/topics/systems/octopus.gmi b/topics/systems/octopus.gmi
index 0929a65..1420865 100644
--- a/topics/systems/octopus.gmi
+++ b/topics/systems/octopus.gmi
@@ -3,6 +3,10 @@
 # Tags
 
 * assigned: pjotrp, efraimf, erikg
+* priority: high
+* status: completed, closed
+* type: system administration
+* keywords: systems, octopus
 
 # Tasks
 
diff --git a/topics/systems/reboot-tux01-tux02.gmi b/topics/systems/reboot-tux01-tux02.gmi
index afed594..3186a0d 100644
--- a/topics/systems/reboot-tux01-tux02.gmi
+++ b/topics/systems/reboot-tux01-tux02.gmi
@@ -44,3 +44,11 @@ The Linux kernel shows some fixes that are not on Tux01 yet
 => https://lkml.org/lkml/2021/2/17/970
 
 In our case a simple reboot worked, fortunately.
+
+## Tags
+
+* assigned: pjotrp
+* status: unclear
+* priority: medium
+* type: system administration
+* keywords: systems, tux01, tux02, production
diff --git a/topics/systems/tux02-production.gmi b/topics/systems/tux02-production.gmi
index 3a0a3c7..0b698ab 100644
--- a/topics/systems/tux02-production.gmi
+++ b/topics/systems/tux02-production.gmi
@@ -5,6 +5,10 @@ We are going to move production to tux02 - tux01 will be the staging machine. Th
 ## Tags
 
 * assigned: pjotrp
+* status: in progress
+* priority: medium
+* type: system administration
+* keywords: systems, tux02, production
 
 ## Tasks
 
diff --git a/topics/testing/automated-testing.gmi b/topics/testing/automated-testing.gmi
index 378a641..615d3ff 100644
--- a/topics/testing/automated-testing.gmi
+++ b/topics/testing/automated-testing.gmi
@@ -2,7 +2,11 @@
 
 ## Tags
 
-* assigned: fredm bonfacem alex
+* assigned: fredm, bonfacem, alex
+* status: in progress
+* priority: medium
+* type: enhancement
+* keywords: testing, CI, CD
 
 ## Introduction
 
diff --git a/topics/testing/genenetwork-checklist.gmi b/topics/testing/genenetwork-checklist.gmi
index ba19733..8d7e01c 100644
--- a/topics/testing/genenetwork-checklist.gmi
+++ b/topics/testing/genenetwork-checklist.gmi
@@ -5,6 +5,8 @@ This is the checklist to run through when testing GN2.
 ## Tags
 
 * assigned: pjotrp
+* type: documentation
+* keywords: documentation, testing, checklist
 
 ## Tasks