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authorPjotr Prins2023-08-01 10:08:43 +0200
committerPjotr Prins2023-08-01 10:08:46 +0200
commit8f82210cb32e5b22f219a218de9e1beaa092c094 (patch)
tree7324c835146a62df29bb56e7a197946da71fac69 /topics
parent4cbba3e72e7d70d0002935ee9d07917b9e8b0fb6 (diff)
downloadgn-gemtext-8f82210cb32e5b22f219a218de9e1beaa092c094.tar.gz
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-rw-r--r--topics/biohackathon/GNGSoC2023.gmi31
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diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
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+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -54,6 +54,11 @@ git repo genenetwork-machines, guix-bioinformatics
* cgit
* Efraim: gn2 -> channel; Arun tested
+### Week 5
+
+* Added Klaus server for git
+* Fixed channels to work wit Python 3.9 instead of 3.10
+
### More
=> https://ci.genenetwork.org/jobs/guix-bioinformatics
@@ -102,6 +107,13 @@ git repo genenetwork3
* Started work on lmdb+guile:
=> https://github.com/BonfaceKilz/gn-data-vault
+### Week 5
+
+* Metadata - renamed prefixes
+* Short names gn: gnt:
+* Updated virtuoso
+* parsing geno files - lmdb support
+
## LLMs & metadata (RDF)
* lead: Shelby
@@ -137,6 +149,11 @@ git repo genenetwork3
* fetched 1000 publication
* JSON documentation on references
+### Week 5
+
+* Guix container for LLM
+* Expose container to Rupert
+* Add a password
## API to access data from GN
@@ -182,6 +199,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* R api - reference GN/API
* synteny
+### Week 5
+
+* Added back-end support for wikidata - finding inconsistencies
+
## Editing data
* lead: Fred
@@ -203,6 +224,12 @@ git repo gn-docs & genenetwork3 & SPARQL
* Editing works!
* Discussed the approval procedure and edit button for everyone
+### Week 5
+
+* Editing has gone on production - fixing issues
+* Discussion on REST API
+
+
## Guix parametrization
* lead: Sarthak
@@ -228,6 +255,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* BLOG in a stage that we discuss naming conventions
+### Week 5
+
+* Proposed DSL for parameters
+
## Links
* Matrix room is GNSoC2023