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authorPjotr Prins2023-07-20 14:54:48 +0200
committerPjotr Prins2023-07-20 14:54:57 +0200
commit87016ee055fb5151197969b755302d24ee41e80c (patch)
treeec0ef253e0e18e7dc500fc9774d61cd4003bcedd /topics
parent487c9c1898d5de4569de94389baf9ba60cb55515 (diff)
downloadgn-gemtext-87016ee055fb5151197969b755302d24ee41e80c.tar.gz
Meeting notes
Diffstat (limited to 'topics')
-rw-r--r--topics/biohackathon/GNGSoC2023.gmi37
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diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
index 8fe7310..8df2039 100644
--- a/topics/biohackathon/GNGSoC2023.gmi
+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -47,6 +47,13 @@ git repo genenetwork-machines, guix-bioinformatics
* Efraim is doing channels for GN2 and GN3
* Sarthak will try to run guix-forge
+### Week 4
+
+* Arun added channels to CI
+* localhost
+* cgit
+* Efraim: gn2 -> channel; Arun tested
+
### More
=> https://ci.genenetwork.org/jobs/guix-bioinformatics
@@ -87,6 +94,14 @@ git repo genenetwork3
* Bonface demoes new documentation & code
+### Week 4
+
+* Settled on prefixes terms and id
+* Updated man pages
+=> https://github.com/genenetwork/gn-docs/tree/master/rdf-documentation
+* Started work on lmdb+guile:
+=> https://github.com/BonfaceKilz/gn-data-vault
+
## LLMs & metadata (RDF)
* lead: Shelby
@@ -116,6 +131,13 @@ git repo genenetwork3
* Priscilla is working on SLA and document acquisition
* Hosting GN Q&A
+### Week 4
+
+* working on container
+* fetched 1000 publication
+* JSON documentation on references
+
+
## API to access data from GN
* lead: Rupert
@@ -154,6 +176,12 @@ git repo gn-docs & genenetwork3 & SPARQL
=> https://github.com/genenetwork/gn-docs/blob/master/api/alternative-API-structure.md
+### Week 4
+
+* Start working on endpoints
+* R api - reference GN/API
+* synteny
+
## Editing data
* lead: Fred
@@ -170,6 +198,11 @@ git repo gn-docs & genenetwork3 & SPARQL
* Fixing issues
* Meeting on requirements from Arthur and Zach
+### Week 4
+
+* Editing works!
+* Discussed the approval procedure and edit button for everyone
+
## Guix parametrization
* lead: Sarthak
@@ -191,6 +224,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* Preparing for BLOG on S-exp
+### Week 4
+
+* BLOG in a stage that we discuss naming conventions
+
## Links
* Matrix room is GNSoC2023