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| author | Alexander_Kabui | 2024-10-17 13:52:07 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2024-10-17 15:02:54 +0300 |
| commit | 7cd1496f192ac712b0461504b95340f85005cd73 (patch) | |
| tree | ef17fa1403962b3fe23efe9f48e5ad5580573f13 /topics | |
| parent | 534c9613c36524f77c4a834ccc61548c7771549e (diff) | |
| download | gn-gemtext-7cd1496f192ac712b0461504b95340f85005cd73.tar.gz | |
Add link for the task queue implementation for gn3.
Diffstat (limited to 'topics')
| -rw-r--r-- | topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi index 5a88cdc..3df19cc 100644 --- a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi +++ b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi @@ -82,7 +82,8 @@ In this step, we need to retrieve the results outputted from the script in a spe ### Monitoring system for the rqtl script This component involves creating a monitoring system to track the state of the external process and output relevant information to the user. - +We need a way to determine the status for the current job for example +QUEUED, STARTED, INPROGRESS, COMPLETED ## Deep Dive @@ -91,8 +92,13 @@ This component involves creating a monitoring system to track the state of the e ### Running the External Script The RQTL implementation is in R, and we need a strategy for executing this script as an external process. This can be subdivided into several key steps: -- **Task Queue Integration**: - - We will utilize a task queue system (currently implemented in GN3) to manage script execution. +- **Task Queue Integration**: + + - We will utilize a task queue system , + We already have an implementation in gn3 + to manage script execution + +- https://github.com/genenetwork/genenetwork3/blob/0820295202c2fe747c05b93ce0f1c5a604442f69/gn3/commands.py#L101 - **Job Submission**: - Each API call will create a new job in the task queue, which will handle the execution of the R script. |