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| author | jgart | 2021-11-24 00:39:40 -0500 |
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| committer | jgart | 2021-11-24 00:39:40 -0500 |
| commit | 1259ed80a7f60a9f7ba82f3751990ac24a8e9436 (patch) | |
| tree | 8f235d104edf59e78d74b5e4f997a4dc57c4c013 /topics | |
| parent | f46ed96a01617514547da4636b6121fadc5f2326 (diff) | |
| download | gn-gemtext-1259ed80a7f60a9f7ba82f3751990ac24a8e9436.tar.gz | |
Add citation for Shapiro-Wilk Test
Diffstat (limited to 'topics')
| -rw-r--r-- | topics/quality-control/qc-checks.gmi | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/topics/quality-control/qc-checks.gmi b/topics/quality-control/qc-checks.gmi index 30236e1..713fa0b 100644 --- a/topics/quality-control/qc-checks.gmi +++ b/topics/quality-control/qc-checks.gmi @@ -58,3 +58,16 @@ phenotypes. -- Rob ``` + +``` +QTL analysis was performed in F2 mice using the R package R/qtl +(RRID:SCR_009085) as previously described.11,29,42 Quality checking +of genotypes and QTL analysis were performed in R (https://www.r- +project.org/) using R/bestNormalize (https://github.com/petersonR/ +bestNormalize) and R/qtl.42 Phenotypes were assessed for normality +using the Shapiro–Wilk Test. Because some of the data residuals devi- +ated significantly from normality, we used the orderNorm function to +perform Ordered Quantile normalization43 on all phenotypes. QTL +-- +A quantitative trait variant in Gabra2 underlies increased methamphetamine stimulant sensitivity +``` |