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authorPjotr Prins2023-12-03 09:39:57 -0600
committerPjotr Prins2023-12-03 09:39:57 -0600
commitfe2d644507548dcbaaf8d675d2e5c96795101d70 (patch)
tree1d5c0a0642bdc20bafe9f2d9cc1aab6e22e12281 /topics/xapian-indexing-on-tux01.gmi
parent064af73a670617c76775f8f94f74e3d5d611d18e (diff)
downloadgn-gemtext-fe2d644507548dcbaaf8d675d2e5c96795101d70.tar.gz
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-How to run the Xapian indexing script
-
-Change to Arun's user:
-su aruni
-
-Remove old xapian directory + contents:
-sudo -u aruni rm -r /export/data/genenetwork/xapian
-
-Run guix shell:
-/home/zas1024/opt/guix/bin/guix shell --container --network --share=/export/data/genenetwork/ --development --file=guix.scm
-
-Run the indexer script:
-env PYTHONPATH=. python3 scripts/index-genenetwork /export/data/genenetwork/xapian mysql://webqtlout:webqtlout@127.0.0.1:3306/db_webqtl
-
-OR Put the following in a shell script and run as Arun
-
-rm -r /export/data/genenetwork/xapian && /home/zas1024/opt/guix/bin/guix shell --container --network --share=/export/data/genenetwork/ --development --file=guix.scm -- env PYTHONPATH=. python3 scripts/index-genenetwork /export/data/genenetwork/xapian mysql://webqtlout:webqtlout@127.0.0.1:3306/db_webqtl