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| author | Frederick Muriuki Muriithi | 2022-03-14 11:50:34 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-03-14 11:55:58 +0300 |
| commit | 5333b5392f4259f43afaaa0bf942ba6996b8a0fc (patch) | |
| tree | d54aca85eaa7851c4d47d676b2d9d25a8bfc672d /topics/systems/virtuoso.gmi | |
| parent | 13d2053216a4ea09fee2ebfb5aa4c4e2d19d7c7e (diff) | |
| download | gn-gemtext-5333b5392f4259f43afaaa0bf942ba6996b8a0fc.tar.gz | |
Tag and prioritise a bunch of issues
Diffstat (limited to 'topics/systems/virtuoso.gmi')
| -rw-r--r-- | topics/systems/virtuoso.gmi | 13 |
1 files changed, 10 insertions, 3 deletions
diff --git a/topics/systems/virtuoso.gmi b/topics/systems/virtuoso.gmi index 187f961..05819e1 100644 --- a/topics/systems/virtuoso.gmi +++ b/topics/systems/virtuoso.gmi @@ -1,5 +1,12 @@ # Running Virtuoso +## Tags + +* type: documentation +* status: unclear + +## Description + We run instances of Virtuoso for our graph databases. Virtuoso is a remarkable software and running some really large databases, including Uniprot => https://github.com/openlink/virtuoso-opensource @@ -17,7 +24,7 @@ guix environment --ad-hoc virtuoso-ose -- virtuoso-t -f The database is initialized from 'penguin2:/export/virtuoso/var/lib/virtuoso/db/virtuoso.ini' -## Running a new instance +### Running a new instance For testing we want to run a temporary instance. Let's start from the virtuoso.ini file: @@ -58,7 +65,7 @@ ssh -L 28890:127.0.0.1:28890 -f -N myname@penguin2.genenetwork.org and surf to http://localhost:28890/conductor. A good time to change the default password (dba:dba)! -## Uploading data with CURL +### Uploading data with CURL To upload RDF I use rapper to validate the data. First delete the existing graph with something like @@ -76,7 +83,7 @@ Where BioHackrXiv is the name of the graph (in this example). A python version c => https://github.com/pubseq/bh20-seq-resource/blob/master/scripts/update_virtuoso/check_for_updates.py -## Virtuoso.ini +### Virtuoso.ini What changed in $HOME/services/virtuoso/virtuoso.ini |