diff options
| author | Pjotr Prins | 2025-07-10 17:43:40 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2026-01-05 11:12:10 +0100 |
| commit | 5db42fb3327d8ee6a5714e83ba756a00e8dcc114 (patch) | |
| tree | 725cb6821aac2ce17b94be57dd7d58c05e0670d0 /topics/systems/mariadb/precompute-mapping-input-data.gmi | |
| parent | bc2bcee2057edef6b5a8ebdc5e8e7ff5e2b6f187 (diff) | |
| download | gn-gemtext-5db42fb3327d8ee6a5714e83ba756a00e8dcc114.tar.gz | |
precompute notes
Diffstat (limited to 'topics/systems/mariadb/precompute-mapping-input-data.gmi')
| -rw-r--r-- | topics/systems/mariadb/precompute-mapping-input-data.gmi | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/topics/systems/mariadb/precompute-mapping-input-data.gmi b/topics/systems/mariadb/precompute-mapping-input-data.gmi index 977120d..d3b9901 100644 --- a/topics/systems/mariadb/precompute-mapping-input-data.gmi +++ b/topics/systems/mariadb/precompute-mapping-input-data.gmi @@ -2,7 +2,7 @@ GN relies on precomputed mapping scores for search and other functionality. Here we prepare for a new generation of functionality that introduces LMMs for compute and multiple significant scores for queries. -At this stage we precompute GEMMA and tarball or lmdb it. As a project is never complete we need to add a metadata record in each tarball that track the status of the 'package'. Also, to offload compute to machines without DB access we need to prepare a first step that contains genotypes and phenotypes for compute. The genotypes have to be shared, as well as the computed kinship with and without LOCO. See +At this stage we precompute GEMMA and tarball or lmdb it. As a project is never complete we need to add a metadata record in each tarball that tracks the status of the 'package'. Also, to offload compute to machines without DB access we need to prepare a first step that contains genotypes and phenotypes for compute. The genotypes have to be shared, as well as the computed kinship with and without LOCO. See => /topics/data/precompute/steps @@ -43,7 +43,11 @@ And after: # Info -## Original qtlreaper version +## Original qtlreaper version for PublishData + +=> precompute-publishdata + +## Original qtlreaper version for ProbeSetData The original reaper precompute lives in |
