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authorPjotr Prins2025-07-10 17:43:40 +0200
committerPjotr Prins2026-01-05 11:12:10 +0100
commit5db42fb3327d8ee6a5714e83ba756a00e8dcc114 (patch)
tree725cb6821aac2ce17b94be57dd7d58c05e0670d0 /topics/systems/mariadb/precompute-mapping-input-data.gmi
parentbc2bcee2057edef6b5a8ebdc5e8e7ff5e2b6f187 (diff)
downloadgn-gemtext-5db42fb3327d8ee6a5714e83ba756a00e8dcc114.tar.gz
precompute notes
Diffstat (limited to 'topics/systems/mariadb/precompute-mapping-input-data.gmi')
-rw-r--r--topics/systems/mariadb/precompute-mapping-input-data.gmi8
1 files changed, 6 insertions, 2 deletions
diff --git a/topics/systems/mariadb/precompute-mapping-input-data.gmi b/topics/systems/mariadb/precompute-mapping-input-data.gmi
index 977120d..d3b9901 100644
--- a/topics/systems/mariadb/precompute-mapping-input-data.gmi
+++ b/topics/systems/mariadb/precompute-mapping-input-data.gmi
@@ -2,7 +2,7 @@
 
 GN relies on precomputed mapping scores for search and other functionality. Here we prepare for a new generation of functionality that introduces LMMs for compute and multiple significant scores for queries.
 
-At this stage we precompute GEMMA and tarball or lmdb it. As a project is never complete we need to add a metadata record in each tarball that track the status of the 'package'. Also, to offload compute to machines without DB access we need to prepare a first step that contains genotypes and phenotypes for compute. The genotypes have to be shared, as well as the computed kinship with and without LOCO. See
+At this stage we precompute GEMMA and tarball or lmdb it. As a project is never complete we need to add a metadata record in each tarball that tracks the status of the 'package'. Also, to offload compute to machines without DB access we need to prepare a first step that contains genotypes and phenotypes for compute. The genotypes have to be shared, as well as the computed kinship with and without LOCO. See
 
 => /topics/data/precompute/steps
 
@@ -43,7 +43,11 @@ And after:
 
 # Info
 
-## Original qtlreaper version
+## Original qtlreaper version for PublishData
+
+=> precompute-publishdata
+
+## Original qtlreaper version for ProbeSetData
 
 The original reaper precompute lives in