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| author | jgart | 2021-11-19 01:43:21 -0500 |
|---|---|---|
| committer | jgart | 2021-11-19 01:43:21 -0500 |
| commit | eb2c81c4fdeab43f1d8b0b746638075562829040 (patch) | |
| tree | 4cb8f17e24ad53523d1ea499f11a4085d98b318d /topics/quality-control/qc-checks.gmi | |
| parent | 5300d6034fad3a57e45795a485f70b0aeef1f665 (diff) | |
| download | gn-gemtext-eb2c81c4fdeab43f1d8b0b746638075562829040.tar.gz | |
Add more info to qc checks
Diffstat (limited to 'topics/quality-control/qc-checks.gmi')
| -rw-r--r-- | topics/quality-control/qc-checks.gmi | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/topics/quality-control/qc-checks.gmi b/topics/quality-control/qc-checks.gmi index 55b4847..f2e47fd 100644 --- a/topics/quality-control/qc-checks.gmi +++ b/topics/quality-control/qc-checks.gmi @@ -2,6 +2,18 @@ 1. Gene Symbols to ProbeSetId (Affymetrix format): +We favour using Illumina, Affimetrix, and other platform formats. + +Custom formats require a new annotation file to be created. + +We usually use Ensemble ID or Gene IDs. + +1.1 Ensemble transcript IDs usually have duplicates that need to be pruned. + +ENSMBL1234 + +## Example Gene Symbol to ProbeSetId + AFFX-BkGr-GC03_st -> TCO500002136.mm.2 2. Inbred Strain names should prefer long form: |