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| author | Arun Isaac | 2022-06-21 15:56:39 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-06-21 15:59:03 +0530 |
| commit | 50696f6db4972a7cdb641447f0f9a0dd1372cb9c (patch) | |
| tree | a0ac7285448ac4a84f70580d36a424be8daefd25 /topics/genotype-database.gmi | |
| parent | 4e9b6cf5df41c083aad8e1e0961098585f86526e (diff) | |
| download | gn-gemtext-50696f6db4972a7cdb641447f0f9a0dd1372cb9c.tar.gz | |
genotype-database: Document reading the entire matrix.
* topics/genotype-database.gmi: Document reading the entire matrix
using the genodb.nparray function.
Diffstat (limited to 'topics/genotype-database.gmi')
| -rw-r--r-- | topics/genotype-database.gmi | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/topics/genotype-database.gmi b/topics/genotype-database.gmi index ea3db7c..5828b77 100644 --- a/topics/genotype-database.gmi +++ b/topics/genotype-database.gmi @@ -9,12 +9,13 @@ To convert a plain text GeneNetwork genotype file `BXD.geno` to a genodb genotyp ``` => https://git.genenetwork.org/GeneNetwork/cl-gn cl-gn -genenetwork3 includes a tiny Python library to read the built genodb database. Here is a sample invocation reading row 17 and column 13 from a database at `/tmp/bxd`. +genenetwork3 includes a tiny Python library to read the built genodb database. Here is a sample invocation reading the entire matrix, row 17 and column 13 from a database at `/tmp/bxd`. ``` from gn3 import genodb with genodb.open('/tmp/bxd') as db: matrix = genodb.matrix(db) + print(genodb.nparray(matrix)) print(genodb.row(matrix, 17)) print(genodb.column(matrix, 13)) ``` |