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| author | Arun Isaac | 2023-01-18 18:29:54 +0000 |
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| committer | Arun Isaac | 2023-01-18 18:31:08 +0000 |
| commit | c7f000bbbcfa6ffd4fcb66532d3b1fd9d8d7aa98 (patch) | |
| tree | efa48cedd58d0ff7667c3d6e3d84076fa5f3b41e /topics/deployment.gmi | |
| parent | 8ba2739f120119114d99f1ac19665ec6215b36c4 (diff) | |
| download | gn-gemtext-c7f000bbbcfa6ffd4fcb66532d3b1fd9d8d7aa98.tar.gz | |
Start deployment documentation.
Diffstat (limited to 'topics/deployment.gmi')
| -rw-r--r-- | topics/deployment.gmi | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/topics/deployment.gmi b/topics/deployment.gmi new file mode 100644 index 0000000..02be5ff --- /dev/null +++ b/topics/deployment.gmi @@ -0,0 +1,21 @@ +# Deploy GeneNetwork + +This page attempts to document the very convoluted deployment process we have for GeneNetwork. Keeping this documentation up-to-date is going to be challenging, to say the least. So, the Guix configuration for the CI/CD container should be considered the authoritative reference. +=> https://github.com/genenetwork/genenetwork-machines/blob/main/genenetwork-development.scm +This document is for those looking for a succinct textual reference and would rather not dig through G-expressions. + +## genenetwork2 + +TODO. Volunteers welcome! + +## genenetwork3 + +Deployment-specific settings for genenetwork3 should be written to a configuration file and the path to that file should be set in the GN3_CONF environment variable. + +Here's a typical configuration file. Please take care to customize it to your specific requirements. +``` +SPARQL_ENDPOINT="http://localhost:9082/sparql" +DATA_DIR="/export/data/genenetwork" +XAPIAN_DB_PATH="/export/data/genenetwork-xapian" +``` +DATA_DIR must contain two directories—genotype_files and synteny. |