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authorPjotr Prins2023-08-05 17:57:29 +0200
committerPjotr Prins2023-08-05 17:58:32 +0200
commit4418e7d0152a95f0164c254918648852841e1b3e (patch)
tree5bee5c1c072eea8cd1e9f96886176738a523e08d /topics/biohackathon
parent12d889d6360daac147e24c0db48643456a95d16c (diff)
downloadgn-gemtext-4418e7d0152a95f0164c254918648852841e1b3e.tar.gz
GNSoC
Diffstat (limited to 'topics/biohackathon')
-rw-r--r--topics/biohackathon/GNGSoC2023.gmi26
1 files changed, 25 insertions, 1 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
index 623a6c6..a5f9019 100644
--- a/topics/biohackathon/GNGSoC2023.gmi
+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -59,6 +59,10 @@ git repo genenetwork-machines, guix-bioinformatics
* Added Klaus server for git
* Fixed channels to work wit Python 3.9 instead of 3.10
+### Week 6
+
+* Towards a new workbench with cgit support
+
### More
=> https://ci.genenetwork.org/jobs/guix-bioinformatics
@@ -112,7 +116,11 @@ git repo genenetwork3
* Metadata - renamed prefixes
* Short names gn: gnt:
* Updated virtuoso
-* parsing geno files - lmdb support
+* parsing geno files - lmdb support
+
+### Week 6
+
+* Improvements on RDF
## LLMs & metadata (RDF)
@@ -155,6 +163,10 @@ git repo genenetwork3
* Expose container to Rupert
* Add a password
+### Week 6
+
+* Very close to a working flask app Rupert can try next week
+
## API to access data from GN
* lead: Rupert
@@ -203,6 +215,11 @@ git repo gn-docs & genenetwork3 & SPARQL
* Added back-end support for wikidata - finding inconsistencies
+### Week 6
+
+* API ready for running in a production environment
+* Using latest RDF
+
## Editing data
* lead: Fred
@@ -229,6 +246,9 @@ git repo gn-docs & genenetwork3 & SPARQL
* Editing has gone on production - fixing issues
* Discussion on REST API
+### Week 6
+
+* Progress on authorization and editing
## Guix parametrization
@@ -259,6 +279,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* Proposed DSL for parameters
+### Week 6
+
+* Posted BLOG and started implementation
+
## Links
* Matrix room is GNSoC2023