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| author | Lisso_ | 2025-09-24 16:27:02 +0300 |
|---|---|---|
| committer | Pjotr Prins | 2026-01-05 11:12:10 +0100 |
| commit | 3447970a7ce8fc7848c14ea31aeec3d4b9faad65 (patch) | |
| tree | 0be8d6ba7e50bf46cf405904e38de7ee42b2cb14 /tasks | |
| parent | 934890bbc42905a58ca434a2f09c19f1a7ecb6c0 (diff) | |
| download | gn-gemtext-3447970a7ce8fc7848c14ea31aeec3d4b9faad65.tar.gz | |
Fetche lab patch 1 (#61)
* Adding a new file on progress in gn learning team * Update progress-hurdles-lessons-learned-journey.gmi My first commit to the file * Update progress-hurdles-lessons-learned-journey.gmi * A new issue on updating strain names to the GN database * updated an issue on uploading genetype names * Update hurdles_updating_names_to_GN.gmi * added my name, fixed the typo, and updated the keyword value * new updates on my learning journey * Create Case_Attributes_GN2 * Update felixl.gmi * Update felixl.gmi
Diffstat (limited to 'tasks')
| -rw-r--r-- | tasks/felixl.gmi | 31 |
1 files changed, 30 insertions, 1 deletions
diff --git a/tasks/felixl.gmi b/tasks/felixl.gmi index 22e0d96..7a472a1 100644 --- a/tasks/felixl.gmi +++ b/tasks/felixl.gmi @@ -41,7 +41,7 @@ * PhD tasks * [ X ] Complete and share concept note and timeline to supervisors, have a meeting for progress - * [ ] Make a milestone on chapter one manuscript (deep dive into the selected papers){THE BIG PICTURE; a complete draft by early May} + * [+] Make a milestone on chapter one manuscript (deep dive into the selected papers){THE BIG PICTURE; a complete draft by early May} * Programming * [ ] Make a milestone with the uploader (really push and learn!) @@ -187,6 +187,35 @@ * - request bonz/alex's help on this (to save time) +* ## this week (30-06-onwards) +* [X] - mapping offsprings to founders (hs rats) +* [+] - upload kilifish to genenetwork +* [-] - revise celegans smoothing (genotypes) + +* ## this week (07-07-onwards) +* [X] - generate haplotypes for offsprings and founders combined; intepretation next.., +* [+] - keep improving the uploader via data uploading and error solving +* [-] - close smoothing revision for celegans, as left before +* [X] - why should people read my paper on improving genotyping methods? +* - on smoothing (low density genotypes for mapping, high density genotypes for fine mapping.,) +* - liftovers due to reference versions (currently, a challenge to be looked upon) +* - founders and their offsprings in genotyping +* - pangenomics and machine learning for improved genotyping + +** keys (+; in progress, X; done, -; not yet) +* ## this week (14-07-onwards) +* [+] - map founders to offspring, work with only pure recombiantions + [+] - tools available? (plink, rqtl2, beagle, etc) + [+] - custom pipeline, to reflect gaps in the existing tools? (dealing with multiparent species) + [+] - documentation for the paper write up + +* ## this week (21-07-onwards) +* [ ] - HS rats smoothing continues +* [ ] - documenting the milestones +* [ ] - see the possibility to write a tool from it +* [ ] - Pushing kilifish to genenetwork2/learn the source code build up +* [ ] - resmoothen celegans genotypes with the new knowledge + ### Later weeks (non-programming tasks) |