diff options
| author | Munyoki Kilyungi | 2023-06-26 19:00:26 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-06-26 19:01:47 +0300 |
| commit | b6bddd71a83d3d04153de5b9eea35b4a45c344d7 (patch) | |
| tree | cd6929fa6168426b5a4501d1c172f4302f5505dd /issues | |
| parent | 71668ffb4659078c294f4b0616465921ec5c0e9c (diff) | |
| download | gn-gemtext-b6bddd71a83d3d04153de5b9eea35b4a45c344d7.tar.gz | |
Close probeset-metadata-upload issue
Diffstat (limited to 'issues')
| -rw-r--r-- | issues/probeset-metadata-upload.gmi | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/issues/probeset-metadata-upload.gmi b/issues/probeset-metadata-upload.gmi index 4020416..b7ba196 100644 --- a/issues/probeset-metadata-upload.gmi +++ b/issues/probeset-metadata-upload.gmi @@ -4,7 +4,7 @@ * assigned: bonfacem * type: bug -* status: open +* status: closed Probeset metadata is the only significant metadata that remains to be uploaded. Uploading using SPARQL'S endpoint (either using CURL or the load-rdf script) doesn't work. As such, I'll have to work out a different way to upload this metadata. Here's the current size of the datasets I'm trying to upload: @@ -17,3 +17,10 @@ drwxr-xr-x 9 bonfacem bonfacem 4.0K Jun 15 07:04 .. -rw-r--r-- 1 bonfacem bonfacem 1014M Jun 16 08:04 dump-probeset-1.ttl -rw-r--r-- 1 bonfacem bonfacem 1009M Jun 16 08:18 dump-probeset-2.ttl ``` + +This has been resolved in: + +=> https://github.com/genenetwork/genenetwork-machines/pull/3 Add virtuoso allowed dirs +=> https://gitlab.com/genenetwork/guix-bioinformatics/-/merge_requests/24 Add dirs-allowed to virtuoso configs + +The public-sparql and genenetwork-development containers were re-built to apply the above changes. |