summaryrefslogtreecommitdiff
path: root/issues
diff options
context:
space:
mode:
authorMunyoki Kilyungi2023-06-26 19:00:26 +0300
committerMunyoki Kilyungi2023-06-26 19:01:47 +0300
commitb6bddd71a83d3d04153de5b9eea35b4a45c344d7 (patch)
treecd6929fa6168426b5a4501d1c172f4302f5505dd /issues
parent71668ffb4659078c294f4b0616465921ec5c0e9c (diff)
downloadgn-gemtext-b6bddd71a83d3d04153de5b9eea35b4a45c344d7.tar.gz
Close probeset-metadata-upload issue
Diffstat (limited to 'issues')
-rw-r--r--issues/probeset-metadata-upload.gmi9
1 files changed, 8 insertions, 1 deletions
diff --git a/issues/probeset-metadata-upload.gmi b/issues/probeset-metadata-upload.gmi
index 4020416..b7ba196 100644
--- a/issues/probeset-metadata-upload.gmi
+++ b/issues/probeset-metadata-upload.gmi
@@ -4,7 +4,7 @@
* assigned: bonfacem
* type: bug
-* status: open
+* status: closed
Probeset metadata is the only significant metadata that remains to be uploaded. Uploading using SPARQL'S endpoint (either using CURL or the load-rdf script) doesn't work. As such, I'll have to work out a different way to upload this metadata. Here's the current size of the datasets I'm trying to upload:
@@ -17,3 +17,10 @@ drwxr-xr-x 9 bonfacem bonfacem 4.0K Jun 15 07:04 ..
-rw-r--r-- 1 bonfacem bonfacem 1014M Jun 16 08:04 dump-probeset-1.ttl
-rw-r--r-- 1 bonfacem bonfacem 1009M Jun 16 08:18 dump-probeset-2.ttl
```
+
+This has been resolved in:
+
+=> https://github.com/genenetwork/genenetwork-machines/pull/3 Add virtuoso allowed dirs
+=> https://gitlab.com/genenetwork/guix-bioinformatics/-/merge_requests/24 Add dirs-allowed to virtuoso configs
+
+The public-sparql and genenetwork-development containers were re-built to apply the above changes.