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| author | Arun Isaac | 2023-03-14 19:11:46 +0000 |
|---|---|---|
| committer | Arun Isaac | 2023-03-14 19:12:15 +0000 |
| commit | af11754981f8c914130a606de2b3653d7b2a8e52 (patch) | |
| tree | 341a25e20f43dbad25aae9b1969c04da1e745337 /issues/sample-data-caching-problem.gmi | |
| parent | 44c09e1d89b3a708fa4bb1eb6cf8e6ef976ddfa1 (diff) | |
| download | gn-gemtext-af11754981f8c914130a606de2b3653d7b2a8e52.tar.gz | |
Add gmi extension to issue files without one.
Diffstat (limited to 'issues/sample-data-caching-problem.gmi')
| -rw-r--r-- | issues/sample-data-caching-problem.gmi | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/issues/sample-data-caching-problem.gmi b/issues/sample-data-caching-problem.gmi new file mode 100644 index 0000000..bf3078c --- /dev/null +++ b/issues/sample-data-caching-problem.gmi @@ -0,0 +1,19 @@ + +# sample data caching bug + +When we cache sample data (mainly for features like correlations), it doesn't take into account changes in the sample list (which is derived from the .geno file). + +While this isn't frequently a problem, it was recently encountered with the BXD-Longevity group (which has had a number of recent changes to its .geno file, including changing the order of cases/samples, which basically rendered the cached sample data completely wrong) + +The fix to this is probably just to include the last updated time-stamp for the .geno file when caching. I'll probably do this in the next few days (maybe later today). + +The relevant caching code is here - https://github.com/genenetwork/genenetwork2/blob/2c22e593c59a9b4f9129a2e669443709d9c5154a/wqflask/base/data_set.py#L1288-L1317 + + +# Tags + +* assigned: zsloan,alex +* priority: medium +* type: bug +* status: open +* keywords: correlation,caching
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