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| author | Artyom Bologov | 2024-05-02 02:45:10 +0400 |
|---|---|---|
| committer | Artyom Bologov | 2024-05-02 02:45:29 +0400 |
| commit | d278f20e3510a934fc838036eff3c039dbae388b (patch) | |
| tree | 7a3c87beca3ca508f24bdb7748a50cc6d44ff96e /issues/mgamma | |
| parent | 0d541ccfcfd6563602973aefecc88c424d3fb511 (diff) | |
| download | gn-gemtext-d278f20e3510a934fc838036eff3c039dbae388b.tar.gz | |
mgamma/..convert: Metadata is done.
Diffstat (limited to 'issues/mgamma')
| -rw-r--r-- | issues/mgamma/mgamma-convert.gmi | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/issues/mgamma/mgamma-convert.gmi b/issues/mgamma/mgamma-convert.gmi index d7350df..d1b432a 100644 --- a/issues/mgamma/mgamma-convert.gmi +++ b/issues/mgamma/mgamma-convert.gmi @@ -13,7 +13,7 @@ MGamma can convert between different formats. * [ ] Store genotypes as floats instead of doubles in lmdb * [X] Required for the above: rework the type system in guile-gsl to allow float vectors/matrices * [ ] Add annotations to genotype lmdb format - probably as the first named columns -* [ ] Provide a metadata header in JSON that tracks such info and a version +* [X] Provide a metadata header in JSON that tracks such info and a version ``` {type: "geno", version:0.01, float: true, anno:["name","chr","pos"]} @@ -26,7 +26,7 @@ MGamma can convert between different formats. * [X] Add individual names as first column in kinship rows (implemented as plain unsigned ints for now) * [ ] Somehow find the names for individuals? Is there a file format for that? * [X] If symmetric only store half the data -* [ ] Add JSON meta header to track that information +* [X] Add JSON meta header to track that information ``` {type: "GRM", version:0.01, float: true, symmetric: true} |