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| author | Pjotr Prins | 2024-04-17 03:07:20 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2024-04-17 03:07:20 -0500 |
| commit | c535013f8dad2b39cf8dadff61cea49e7ccef3c5 (patch) | |
| tree | 53c67a469f74669d41e5fdfbd1b18ef728310b1b /issues/mgamma | |
| parent | 1b767ca373452ad446e1f78e2e238abe590dd55d (diff) | |
| download | gn-gemtext-c535013f8dad2b39cf8dadff61cea49e7ccef3c5.tar.gz | |
mgamma: convert tasks
Diffstat (limited to 'issues/mgamma')
| -rw-r--r-- | issues/mgamma/mgamma-convert.gmi | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/issues/mgamma/mgamma-convert.gmi b/issues/mgamma/mgamma-convert.gmi new file mode 100644 index 0000000..d0ece51 --- /dev/null +++ b/issues/mgamma/mgamma-convert.gmi @@ -0,0 +1,18 @@ +# MGAMMA Convert + +MGamma can convert between different formats. + +# Tags + +* assigned: pjotrp, artyom +* type: feature +* priority: high + +# Tasks + +* [ ] Store genotypes as floats instead of doubles in lmdb +* [ ] Add annotations to genotype lmdb format - probably as the first named columns +* [ ] Provide a metadata header in JSON that tracks such info and a version +* [ ] Convert genotypes from strings using Rqtl2 CSV and metadata-JSON version of the control format, see + +=> https://kbroman.org/qtl2/assets/vignettes/input_files.html |