New issue: guix build gn-uploader error

1 files changed, 88 insertions, 0 deletions

diff --git a/issues/gn-uploader/guix-build-gn-uploader-error.gmi b/issues/gn-uploader/guix-build-gn-uploader-error.gmi
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+# guix build gn-uploader: error
+
+## Tags
+
+* assigned: fredm, aruni
+* status: open
+* priority: critical
+* 
+* keywords: guix, gn-uploader
+
+## Description
+
+Trying to build `gn-uploader` with
+
+> $ guix build -L /home/frederick/genenetwork/guix-bioinformatics gn-uploader
+
+in my local development fails with:
+
+> ︙
+> ice-9/boot-9.scm:1685:16: In procedure raise-exception:
+> In procedure utime: No such file or directory
+> builder for `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1
+> build of /gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv failed
+> View build log at '/var/log/guix/drvs/i8/pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv.gz'.
+> guix build: error: build of `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed
+
+with the file having some of the following
+
+> ︙
+> phase `unpack' succeeded after 48.0 seconds
+> starting phase `ensure-no-mtimes-pre-1980'
+> error: in phase 'ensure-no-mtimes-pre-1980': uncaught exception:
+> system-error "utime" "~A" ("No such file or directory") (2) 
+> phase `ensure-no-mtimes-pre-1980' failed after 0.0 seconds
+> Backtrace:
+>   13 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj…")
+> In guix/build/gnu-build-system.scm:
+>   908:2 12 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #)
+> In ice-9/boot-9.scm:
+>   1752:10 11 (with-exception-handler _ _ #:unwind? _ # _)
+> ︙
+
+Building on tux02 with the same commit raises the error
+
+> ︙
+> ice-9/boot-9.scm:1685:16: In procedure raise-exception:
+> In procedure copy-file: No space left on device
+> note: build failure may have been caused by lack of free disk space
+> builder for `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1
+> build of /gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv failed
+> View build log at '/var/log/guix/drvs/ra/3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv.gz'.
+> guix build: error: build of `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed
+
+with the error file containing
+
+> ︙
+> `/gnu/store/h0zywgd0i8m6ssnyq5ngx34r1c26a65s-git-checkout/tests/test_data/standarderror_1_error_at_end.tsv' -> `./tests/test_data/standarderror_1_erro
+> r_at_end.tsv'
+> error: in phase 'unpack': uncaught exception:
+> system-error "copy-file" "~A" ("No space left on device") (28) 
+> phase `unpack' failed after 2.8 seconds
+> Backtrace:
+>           17 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj<E2><80><A6>")
+> In guix/build/gnu-build-system.scm:
+>     908:2 16 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #)
+> In ice-9/boot-9.scm:
+> ︙
+> ice-9/boot-9.scm:1685:16: In procedure raise-exception:
+> In procedure copy-file: No space left on device
+
+There is plenty of space on the tux02:
+
+> $ df -h /gnu /tmp
+> Filesystem      Size  Used Avail Use% Mounted on
+> /dev/nvme1n1p5  117G   82G   29G  74% /gnu
+> /dev/nvme1n1p2   30G   26G  2.1G  93% /
+
+so we know that's not a problem.
+
+A similar thing had shown up on space.uthsc.edu.
+
+### Troubleshooting Efforts
+
+I have attempted checking out
+=> https://git.genenetwork.org/guix-bioinformatics/commit/?h=fred-updates-20240313&id=869598d39a532c6acc83bb0b9d21baaa79476973 commit 869598d39a532c6acc83bb0b9d21baaa79476973
+and creating a branch from it then
+=> https://git.genenetwork.org/guix-bioinformatics/commit/?h=fred-updates-20240313&id=4105a3e463982f46dcc9a537267fb77bb2322b9a updating the commit and hash
+in the new branch, but I still get the same failures above.