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| author | Pjotr Prins | 2021-09-15 06:12:57 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2021-09-15 06:12:57 -0500 |
| commit | c9a8663ee8b5bb7e2dcda6d443c07f32e977f95a (patch) | |
| tree | 72fdd6e166c7ebc914744fc0f400598e1a34464a /issues/genenetwork1 | |
| parent | feaaf31062a77b986792a21b9df3cd617611fda4 (diff) | |
| download | gn-gemtext-c9a8663ee8b5bb7e2dcda6d443c07f32e977f95a.tar.gz | |
GN1
Diffstat (limited to 'issues/genenetwork1')
| -rw-r--r-- | issues/genenetwork1/gn1-mapping-broken.gmi | 19 | ||||
| -rw-r--r-- | issues/genenetwork1/gn1-slowness.gmi | 17 |
2 files changed, 36 insertions, 0 deletions
diff --git a/issues/genenetwork1/gn1-mapping-broken.gmi b/issues/genenetwork1/gn1-mapping-broken.gmi new file mode 100644 index 0000000..6a32053 --- /dev/null +++ b/issues/genenetwork1/gn1-mapping-broken.gmi @@ -0,0 +1,19 @@ +# Marker mapping + +Marker regression is broken with + +``` +Traceback (most recent call last): + File "/gnshare/gn/web/webqtl/cmdLine/webqtlCmdLine.py", line 170, in ? + page = MarkerRegressionPage.MarkerRegressionPage(fd) + File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 203, in __init__ + resultstable,tblobj,bottomInfo = self.GenReport(ChrNameOrderIdDict,fd, _genotype, _strains, _vals, _vars) + File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 438, in GenReport + qtlresults = _genotype.regression(strains = _strains, trait = _vals) +AttributeError: 'genotype' object has no attribute 'regression' +``` + +## Tags + +* assigned: zachs, pjotrp +* bug diff --git a/issues/genenetwork1/gn1-slowness.gmi b/issues/genenetwork1/gn1-slowness.gmi new file mode 100644 index 0000000..d632f7c --- /dev/null +++ b/issues/genenetwork1/gn1-slowness.gmi @@ -0,0 +1,17 @@ +# GN1 Slowness + +GN1 needs to clean up the following + +``` +GNRoot="/gnshare/gn" +find $GNRoot/web/tmp -mmin +100 -exec rm -rfv {} \; +find $GNRoot/web/image -mmin +100 -exec rm -rfv {} \; +mkdir -p $GNRoot/web/tmp +mkdir -p $GNRoot/web/image +``` + +Note that the -delete switch is much faster than -exec, so + +``` +find $GNRoot/web/image -mmin +100 -delete +``` |