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| author | Efraim Flashner | 2021-12-21 14:32:10 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2021-12-21 14:32:10 +0200 |
| commit | 580f1b72704b0df0f7fac80afe02553ec2a3ddfa (patch) | |
| tree | 055ba94bd272c3c8acdd3a73ecffadc78c5a4d55 /issues/fix-broken-builds-in-gn2-and-gn3.gmi | |
| parent | 741a3a9b7b66d121021127eabfd0e4b617c46094 (diff) | |
| download | gn-gemtext-580f1b72704b0df0f7fac80afe02553ec2a3ddfa.tar.gz | |
update to genenetwork2 building issues
Diffstat (limited to 'issues/fix-broken-builds-in-gn2-and-gn3.gmi')
| -rw-r--r-- | issues/fix-broken-builds-in-gn2-and-gn3.gmi | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/issues/fix-broken-builds-in-gn2-and-gn3.gmi b/issues/fix-broken-builds-in-gn2-and-gn3.gmi index 85cc2dd..d52d121 100644 --- a/issues/fix-broken-builds-in-gn2-and-gn3.gmi +++ b/issues/fix-broken-builds-in-gn2-and-gn3.gmi @@ -5,7 +5,7 @@ gn3 and gn2. ## Tasks -* assigned: bonfacekilz +* assigned: bonfacekilz, efraim ### Notes @@ -28,3 +28,15 @@ guix build: error: build of `/gnu/store/l5hb8bfz3di3zga93963arlka03lijn8-genenet This starts happening (not yet comfirmed) when python is bumped up from 3.8 to 3.9 + +In addition, there are some dependencies of genenetwork2 which FTBFS, due to incorrect versions of inputs. + +``` + starting phase `sanity-check'¬ + validating 'pingouin' /gnu/store/dpy5ln4zjgv53l8jpm1qalwn45cagxfm-python-pingouin-0.5.0/lib/python3.9/site-packages¬ + ...checking requirements: ERROR: pingouin==0.5.0 (statsmodels 0.11.1 (/gnu/store/ab8k9bwmaml2bplq4bd9xkg08z7bn8fr-python-statsmodels-0.11.1/lib/python3.9/site-packages), Requirement.parse('statsmodels>=0.12.0'), {'pingouin'})¬ + error: in phase 'sanity-check': uncaught exception:¬ + %exception #<&invoke-error program: "python" arguments: ("/gnu/store/nwwr89v2vyg1hs48i49m083vhczsgh3m-sanity-check.py" "/gnu/store/dpy5ln4zjgv53l8jpm1qalwn45cagxfm-python-pingouin-0.5.0/lib/python3.9/site-packages") exit-status: 1 term-signal: #f stop-signal: #f>▸¬ + phase `sanity-check' failed after 0.1 seconds¬ +``` + |