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| author | Arun Isaac | 2022-04-29 17:29:06 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-04-29 17:33:22 +0530 |
| commit | 331e06ba54065cf5f8a0a8611957e1b0f2cfa171 (patch) | |
| tree | 34e262fd0f19d9641aa321f875d4e4d40f3f6f03 /issues/effect-size-for-gemma-is-a-must.gmi | |
| parent | 2ed25799a8af92e3a982b27a16ef7b06b36c7b6b (diff) | |
| download | gn-gemtext-331e06ba54065cf5f8a0a8611957e1b0f2cfa171.tar.gz | |
Add effect size image to issue.
* issues/effect-size-for-gemma-is-a-must.gmi: Add
effect size image.
* pictures/effect-size-for-gemma.png: New file.
Diffstat (limited to 'issues/effect-size-for-gemma-is-a-must.gmi')
| -rw-r--r-- | issues/effect-size-for-gemma-is-a-must.gmi | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/issues/effect-size-for-gemma-is-a-must.gmi b/issues/effect-size-for-gemma-is-a-must.gmi index 137e96e..0644b68 100644 --- a/issues/effect-size-for-gemma-is-a-must.gmi +++ b/issues/effect-size-for-gemma-is-a-must.gmi @@ -8,3 +8,5 @@ Request Type: New feature for GEMMA, User requires these data Main Message: Let's Just Do It. Can be done as a kludge. Just plot the beta of the regression equation of the SNP status (ususally two or three states codes as 0, 1, 2 or -1,0, +1) against the phenotype. The slope is roughly the effect size. This is good enough for most users. The only got-you is slight inflation of due to kinship structure and the Beavis effect when the sample size is low. QUESTION—can I upload an image from Amelie Baud's talk on effect size? + +=> /pictures/effect-size-for-gemma.png |