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| author | Lisso_ | 2023-12-21 11:37:52 +0300 |
|---|---|---|
| committer | GitHub | 2023-12-21 11:37:52 +0300 |
| commit | 57c7fdcf736b9eda2f8befb514a7bf619ccef732 (patch) | |
| tree | fd12d4fc7def11e590fd65203854d0a64d6993ee /issues/data_upload_gn | |
| parent | a19f126e635a3ecbc6dbf0102f08209bcdf4cace (diff) | |
| download | gn-gemtext-57c7fdcf736b9eda2f8befb514a7bf619ccef732.tar.gz | |
Hurdles creating issues (#13)
* Adding a new file on progress in gn learning team
* Update progress-hurdles-lessons-learned-journey.gmi
My first commit to the file
* Update progress-hurdles-lessons-learned-journey.gmi
* A new issue on updating strain names to the GN database
* updated an issue on uploading genetype names
* Update hurdles_updating_names_to_GN.gmi
* added my name, fixed the typo, and updated the keyword value
Diffstat (limited to 'issues/data_upload_gn')
| -rw-r--r-- | issues/data_upload_gn/hurdles_updating_names_to_GN.gmi | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/issues/data_upload_gn/hurdles_updating_names_to_GN.gmi b/issues/data_upload_gn/hurdles_updating_names_to_GN.gmi new file mode 100644 index 0000000..3300ece --- /dev/null +++ b/issues/data_upload_gn/hurdles_updating_names_to_GN.gmi @@ -0,0 +1,21 @@ +## Challenges with uploading phenotype and genotype files + +### Tags + +* assigned by:flisso +* assigned to: bonfacem, fred +* priority: high +* type: backend +* keywords: uploader +* status: in progress + +### Problem description + +### Observations made by Rob +There was failure in enforcing unique sample/case/individual names when naming column datasets within and across + +### Observations by Zachary +The phenogen track is biased towards mouse and/or rat. Does not check for species, which is an important functionality to be included. + +### Harm Dataset genetype names versus the available genetype names in GeneNetwork webservice database +There is/was a hurdle on identifying if the genetype name used in Harm dataset are the same as the ones in GN, or at least do they point to the same genotype dataset. |