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| author | zsloan | 2022-10-21 18:34:42 -0500 |
|---|---|---|
| committer | GitHub | 2022-10-21 18:34:42 -0500 |
| commit | 0a90088f9e4a14dceb3c2b9b7d7295c4fef53e7f (patch) | |
| tree | 69f4a3ad6d3e761541131b5cc3709bec027a45c9 /issues/correlations-all-samples.gmi | |
| parent | e1663d03b2030c4d2fef68caf2d8dd030ecf0a20 (diff) | |
| download | gn-gemtext-0a90088f9e4a14dceb3c2b9b7d7295c4fef53e7f.tar.gz | |
Create correlations-all-samples.gmi
Diffstat (limited to 'issues/correlations-all-samples.gmi')
| -rw-r--r-- | issues/correlations-all-samples.gmi | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/issues/correlations-all-samples.gmi b/issues/correlations-all-samples.gmi new file mode 100644 index 0000000..64722ad --- /dev/null +++ b/issues/correlations-all-samples.gmi @@ -0,0 +1,19 @@ +# Correlations are wrongly always using all samples + +## Tags + +* assigned: fredm, zsloan, alexm +* type: bug +* priority: high +* status: ongoing +* keywords: correlations + +## Description + +Do any BXD correlation (for example https://genenetwork.org/show_trait?trait_id=1457022_at&dataset=HC_M2_0606_P against the default/same dataset) + +It uses all 71 samples regardless of what the user chooses in the "Samples" drop-down. + +It should instead use the logic in the lines below (which was initially wrong and I just fixed), but this logic seems like it isn't being used at all with the new rust-correlations code: + +https://github.com/genenetwork/genenetwork2/blob/400320ea0063954f027fa918f77f7518b904c6ba/wqflask/wqflask/correlation/correlation_gn3_api.py#L160-L170 |