mgamma: convert tasks

1 files changed, 12 insertions, 0 deletions

diff --git a/issues/mgamma/mgamma-convert.gmi b/issues/mgamma/mgamma-convert.gmi
index d0ece51..bb19033 100644
--- a/issues/mgamma/mgamma-convert.gmi
+++ b/issues/mgamma/mgamma-convert.gmi
@@ -13,6 +13,18 @@ MGamma can convert between different formats.
 * [ ] Store genotypes as floats instead of doubles in lmdb
 * [ ] Add annotations to genotype lmdb format - probably as the first named columns
 * [ ] Provide a metadata header in JSON that tracks such info and a version
+
+```
+{type: "geno", version:0.01, float: true, anno:["name","chr","pos"]}
+```
 * [ ] Convert genotypes from strings using Rqtl2 CSV and metadata-JSON version of the control format, see
 
 => https://kbroman.org/qtl2/assets/vignettes/input_files.html
+
+* [ ] Write kinship lmdb as floats (half size)
+* [ ] If symmetric only store half the data
+* [ ] Add JSON meta header to track that information
+
+```
+{type: "GRM", version:0.01, float: true, symmetric: true}
+```