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| author | Frederick Muriuki Muriithi | 2024-06-20 10:47:14 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-06-20 10:48:38 -0500 |
| commit | d8d299aef32d19ef8bf087c3b2b032964c385828 (patch) | |
| tree | 5f6e17a181cfda0a678d84e14ade4cf072d4a9ce | |
| parent | 823eb120dc1c4c6369bb8c872fc322da3d633d17 (diff) | |
| download | gn-gemtext-d8d299aef32d19ef8bf087c3b2b032964c385828.tar.gz | |
New Doc: Indicating Heterozygosity.
| -rw-r--r-- | topics/gn-uploader/indicating-heterozygosity.gmi | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/topics/gn-uploader/indicating-heterozygosity.gmi b/topics/gn-uploader/indicating-heterozygosity.gmi new file mode 100644 index 0000000..9d6a8c2 --- /dev/null +++ b/topics/gn-uploader/indicating-heterozygosity.gmi @@ -0,0 +1,27 @@ +# Indicating Heterozygosity + +## Tags + +* status: ongoing +* assigned: fredm, zachs, acenteno +* type: documentation +* priority: medium +* keywords: doc, documentation, heterozygous, hererozygosity + +## Description + +For GeneNetwork, we indicate the the allele values in one of two formats: + +``` +|--------------|----------|----------| +| Source | Format 1 | Format 2 | +|--------------|----------|----------| +| Founder | 0 | 0 | +| Heterozygous | 1 | 0.5 | +| Other | 2 | 1 | +|--------------|----------|----------| +``` + +Values outside of these are considered an error. + +These values are stored in the GenoData table. |