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author | Frederick Muriuki Muriithi | 2024-03-13 10:40:44 +0300 |
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committer | Frederick Muriuki Muriithi | 2024-03-13 10:40:44 +0300 |
commit | a402232e70316e94797f77f3e298ed9892e181fc (patch) | |
tree | 5a6973fbe4d21377b02249e27565aa25c26c096f | |
parent | b0f137449b7b9e33f97871ec0aeb519952c87080 (diff) | |
download | gn-gemtext-a402232e70316e94797f77f3e298ed9892e181fc.tar.gz |
New issue: guix build gn-uploader error
-rw-r--r-- | issues/gn-uploader/guix-build-gn-uploader-error.gmi | 88 |
1 files changed, 88 insertions, 0 deletions
diff --git a/issues/gn-uploader/guix-build-gn-uploader-error.gmi b/issues/gn-uploader/guix-build-gn-uploader-error.gmi new file mode 100644 index 0000000..b0cdf33 --- /dev/null +++ b/issues/gn-uploader/guix-build-gn-uploader-error.gmi @@ -0,0 +1,88 @@ +# guix build gn-uploader: error + +## Tags + +* assigned: fredm, aruni +* status: open +* priority: critical +* +* keywords: guix, gn-uploader + +## Description + +Trying to build `gn-uploader` with + +> $ guix build -L /home/frederick/genenetwork/guix-bioinformatics gn-uploader + +in my local development fails with: + +> ︙ +> ice-9/boot-9.scm:1685:16: In procedure raise-exception: +> In procedure utime: No such file or directory +> builder for `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1 +> build of /gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv failed +> View build log at '/var/log/guix/drvs/i8/pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv.gz'. +> guix build: error: build of `/gnu/store/i8pxiq0xlal1z4ifgqplvhizraj75lc3-gn-uploader-0.0.1-bf4f7c56.drv' failed + +with the file having some of the following + +> ︙ +> phase `unpack' succeeded after 48.0 seconds +> starting phase `ensure-no-mtimes-pre-1980' +> error: in phase 'ensure-no-mtimes-pre-1980': uncaught exception: +> system-error "utime" "~A" ("No such file or directory") (2) +> phase `ensure-no-mtimes-pre-1980' failed after 0.0 seconds +> Backtrace: +> 13 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj…") +> In guix/build/gnu-build-system.scm: +> 908:2 12 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) +> In ice-9/boot-9.scm: +> 1752:10 11 (with-exception-handler _ _ #:unwind? _ # _) +> ︙ + +Building on tux02 with the same commit raises the error + +> ︙ +> ice-9/boot-9.scm:1685:16: In procedure raise-exception: +> In procedure copy-file: No space left on device +> note: build failure may have been caused by lack of free disk space +> builder for `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed with exit code 1 +> build of /gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv failed +> View build log at '/var/log/guix/drvs/ra/3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv.gz'. +> guix build: error: build of `/gnu/store/ra3f63zk1jr980vbhgcx5ssifr87bq8n-gn-uploader-0.0.1-bf4f7c56.drv' failed + +with the error file containing + +> ︙ +> `/gnu/store/h0zywgd0i8m6ssnyq5ngx34r1c26a65s-git-checkout/tests/test_data/standarderror_1_error_at_end.tsv' -> `./tests/test_data/standarderror_1_erro +> r_at_end.tsv' +> error: in phase 'unpack': uncaught exception: +> system-error "copy-file" "~A" ("No space left on device") (28) +> phase `unpack' failed after 2.8 seconds +> Backtrace: +> 17 (primitive-load "/gnu/store/qhg4m0nrrs3862fk9nzgxxrc0hj<E2><80><A6>") +> In guix/build/gnu-build-system.scm: +> 908:2 16 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) +> In ice-9/boot-9.scm: +> ︙ +> ice-9/boot-9.scm:1685:16: In procedure raise-exception: +> In procedure copy-file: No space left on device + +There is plenty of space on the tux02: + +> $ df -h /gnu /tmp +> Filesystem Size Used Avail Use% Mounted on +> /dev/nvme1n1p5 117G 82G 29G 74% /gnu +> /dev/nvme1n1p2 30G 26G 2.1G 93% / + +so we know that's not a problem. + +A similar thing had shown up on space.uthsc.edu. + +### Troubleshooting Efforts + +I have attempted checking out +=> https://git.genenetwork.org/guix-bioinformatics/commit/?h=fred-updates-20240313&id=869598d39a532c6acc83bb0b9d21baaa79476973 commit 869598d39a532c6acc83bb0b9d21baaa79476973 +and creating a branch from it then +=> https://git.genenetwork.org/guix-bioinformatics/commit/?h=fred-updates-20240313&id=4105a3e463982f46dcc9a537267fb77bb2322b9a updating the commit and hash +in the new branch, but I still get the same failures above. |