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| author | Frederick Muriuki Muriithi | 2022-03-23 08:32:02 +0300 |
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| committer | Frederick Muriuki Muriithi | 2022-03-23 08:32:02 +0300 |
| commit | 8c5ad05549276284f07463b7b419676432a38905 (patch) | |
| tree | 194204582f983d1d425feb46c9ab9bc755a2d0c7 | |
| parent | 2f9fb7824d05f9cb3ec983d48f1034e3313affe3 (diff) | |
| download | gn-gemtext-8c5ad05549276284f07463b7b419676432a38905.tar.gz | |
Add `Principle Components` Issue from GitHub
| -rw-r--r-- | issues/adding-principle-component-to-collection-error.gmi | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/issues/adding-principle-component-to-collection-error.gmi b/issues/adding-principle-component-to-collection-error.gmi new file mode 100644 index 0000000..46bcea4 --- /dev/null +++ b/issues/adding-principle-component-to-collection-error.gmi @@ -0,0 +1,50 @@ +# Adding principal component to collection returns an error + +## Tags +* assigned: +* status: unclear +* priority: high +* type: bug +* keywords: collections, from github + +## Members + +* rupertoverall + +## Description + +=> https://github.com/genenetwork/genenetwork2/issues/559 From GitHub + +### Describe the bug + +When calcuating principal components from a correlation matrix, attempting to add one or more PCs to the collection returns the following error: + +``` + + GeneNetwork tux01:gene:2.11-rc2-testing-73131a84f http://www.genenetwork.org/collections/view?uc_id=a7e8dce1-f6a3-464d-85eb-e5a7696ce0b6 (12:12PM UTC Mar 01, 2021) + Traceback (most recent call last): + File "/usr/local/guix-profiles/gn-latest-20201216/lib/python3.8/site-packages/flask/app.py", line 1950, in full_dispatch_request + rv = self.dispatch_request() + File "/usr/local/guix-profiles/gn-latest-20201216/lib/python3.8/site-packages/flask/app.py", line 1936, in dispatch_request + return self.view_functions[rule.endpoint](**req.view_args) + File "/export/local/home/gn2/production/gene/wqflask/wqflask/collect.py", line 194, in view_collection + name, dataset_name = atrait.split(':') + ValueError: not enough values to unpack (expected 2, got 1) + +``` + +### To Reproduce + +* Add transcript traits to a collection. +* Calculate the correlation matrix. +* Select One or more principal components. +* Click 'Add' to add this to the collection. +NOTE: This was done with the 'BXD Aged hippocampus individual data' dataset (GN712). + +### Expected behavior +The PC should be treated as a normal trait and added to the collection. + +### Screenshots + +Environment setup (please complete the following information): +Run on 'http://www.genenetwork.org/' through Firefox on MacOS Mojave. |