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| author | Alexander_Kabui | 2024-10-17 15:01:17 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2024-10-17 15:02:54 +0300 |
| commit | 8a0d2f780987ae483f6b5640440f44045c64ff23 (patch) | |
| tree | bea17fb34b64a08f2bad52c45cc9e5ef8978cd8d | |
| parent | e436c1893e0a2da8e647342002da4d3da6e2b6e4 (diff) | |
| download | gn-gemtext-8a0d2f780987ae483f6b5640440f44045c64ff23.tar.gz | |
Add new step for writing rqtl script in rqtl-2.
| -rw-r--r-- | topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi | 16 |
1 files changed, 14 insertions, 2 deletions
diff --git a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi index 2920247..ca30aef 100644 --- a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi +++ b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi @@ -43,11 +43,23 @@ We will address these challenges and add enhancements by: ## High-Level Design -This is divided into two major components: -* RQTL Api +This is divided into three major components: +* GN3 RQTL-2 Script implementation +* RQTL Api * Monitoring system for the rqtl script + +### GN3 RQTL-2 Script implementation +We currently have an rqtl script written in rqtl https://github.com/genenetwork/genenetwork3/blob/main/scripts/rqtl_wrapper.R +There is a newer rqtl implementation (rqtl-2) which is +a ) is a reimplementation of the QTL analysis software R/qtl, to better handle high-dimensional data and complex cross designs. +To see the difference between the two: +=> oWe aim to implement a seperate script using this while maintaining the one +eimplemented using rqtl1. +(TODO) This probably needs to be split to a new issue(with enough knowledge) , to capture +each computation step . + ### RQTL Api |