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| author | Pjotr Prins | 2025-11-11 15:57:23 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2026-01-05 11:12:11 +0100 |
| commit | 719dcd00dc8a222809ba20699f59a642a928714a (patch) | |
| tree | f9e41a5e58a4229f9407bb90ec6f117d7f4d66b2 | |
| parent | 45e3c68768c480c6da86d44b7c25954364559201 (diff) | |
| download | gn-gemtext-719dcd00dc8a222809ba20699f59a642a928714a.tar.gz | |
GEMMA MAF filter
| -rw-r--r-- | topics/genetics/test-pangenome-derived-genotypes.gmi | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/topics/genetics/test-pangenome-derived-genotypes.gmi b/topics/genetics/test-pangenome-derived-genotypes.gmi index b4256bb..c16e240 100644 --- a/topics/genetics/test-pangenome-derived-genotypes.gmi +++ b/topics/genetics/test-pangenome-derived-genotypes.gmi @@ -9,6 +9,7 @@ For the BXD we have 23M markers(!) whereof 8M *not* on the reference genome. # Tasks +* [ ] Check MAF filter - it may be too stringent * [ ] Use ravanan/CWL to push to Octopus * [ ] Reintroduce nodes that were not annotated for position (Flavia) * [ ] GWA plotter |