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| author | Alexander_Kabui | 2023-07-11 02:28:35 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2023-07-11 02:28:35 +0300 |
| commit | 21602f106c273ee237f923398504f8314444f3a7 (patch) | |
| tree | 19032b675d7e5e3b463ef68635f52532ac87899c | |
| parent | 05c9c9cae1e4a02e05936e2e2f97423415051d48 (diff) | |
| download | gn-gemtext-21602f106c273ee237f923398504f8314444f3a7.tar.gz | |
update issue parallel computation rust/Lmdb parser rust
| -rw-r--r-- | issues/implement-parallel-correlation-with-rust.gmi | 31 |
1 files changed, 27 insertions, 4 deletions
diff --git a/issues/implement-parallel-correlation-with-rust.gmi b/issues/implement-parallel-correlation-with-rust.gmi index d3a1703..1cb41a1 100644 --- a/issues/implement-parallel-correlation-with-rust.gmi +++ b/issues/implement-parallel-correlation-with-rust.gmi @@ -35,14 +35,19 @@ parralel computation * [ ] Figure out how to tell cargo to use the declared dependencies, rather than dowloading the dependencies -* [ ] db queries migration to gn3 or use partial correlation queries +* [*] db queries migration to gn3 or use partial correlation queries -* [ ] add parralel computation +* [x] add parralel computation * [x] code optimization and minor fixes -* [ ] implement biweight mid correlation for rust - +* [x] lmbd parser + +* [x] implement biweight mid correlation for rust + +* [] fix lmdb-rust packaging + +* [] production deployment @@ -101,3 +106,21 @@ also something to be considered is lmdb integrated codebase to store db in text files for probeset types => https://github.com/genenetwork/genenetwork2/pull/736 + + +## 11 july 2022 + + +* Parallel computation implementation with rust + +* lmdb parser in rust + +rather than parsing the code in python gn-correlation-rust can now read and parse +lmdb and csv directly + + +=> https://github.com/Alexanderlacuna/correlation_rust/pull/3/files#diff-87f0275ed65ae8ffe36df25091c9b975defbc920da7b5ec3c2dadb7d57ad4d67 + + + + |