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| author | Munyoki Kilyungi | 2023-12-13 18:26:06 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-12-13 18:26:27 +0300 |
| commit | 177c9541d002e9e12a41800b59234c8b2abb2ac7 (patch) | |
| tree | 3b4cd54ae1229ac2c4fd21349c0546d38320ddfc | |
| parent | a5e1a7d3fccd4894a50c540480344c862a467f41 (diff) | |
| download | gn-gemtext-177c9541d002e9e12a41800b59234c8b2abb2ac7.tar.gz | |
Add new issue regarding transforming genelist metadata.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | issues/transform-genelist-to-rdf.gmi | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/issues/transform-genelist-to-rdf.gmi b/issues/transform-genelist-to-rdf.gmi new file mode 100644 index 0000000..3fac57c --- /dev/null +++ b/issues/transform-genelist-to-rdf.gmi @@ -0,0 +1,22 @@ +# Add GeneList to Metadata + +## Tags + +* assigned: bonfacem +* priority: high +* type: RDF +* keywords: virtuoso + +## Description: + +=> https://www.gene-list.com/about About GeneList + + +The GeneList table in GN fetches metadata about given Genes under Resource Links. + +Example: + +=> https://genenetwork.org/show_trait?trait_id=1460303_at&dataset=HC_M2_0606_P Trait Data and Analysis for 1460303_at + +When dumping data, it's unclear how resources (GeneMANIA, STRING, PANTHER, etc.) become links---they are manually constructed in GN's source code. This transformation is crucial when converting data to RDF. + |