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| author | Frederick Muriuki Muriithi | 2024-02-02 13:35:16 +0300 |
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| committer | Frederick Muriuki Muriithi | 2024-02-02 13:35:16 +0300 |
| commit | 1106d62bd118a4671bc683f61eb473bf7ca54b4e (patch) | |
| tree | e8df026dcf6e2454754079fc575e559120e356c1 | |
| parent | 9905fe00b356ae4055e58375d9ea80181f431644 (diff) | |
| download | gn-gemtext-1106d62bd118a4671bc683f61eb473bf7ca54b4e.tar.gz | |
Add QC check for "pheno" and "phenose" files
| -rw-r--r-- | issues/quality-control/qc-r-qtl2-bundles.gmi | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/issues/quality-control/qc-r-qtl2-bundles.gmi b/issues/quality-control/qc-r-qtl2-bundles.gmi index 7a3007e..e8dc07d 100644 --- a/issues/quality-control/qc-r-qtl2-bundles.gmi +++ b/issues/quality-control/qc-r-qtl2-bundles.gmi @@ -37,12 +37,13 @@ The following "key" details the meanings of certain notations in this file: ### [ ] pheno File(s) * [ ] Check for a minimal number of decimal places (three?) +* [ ] Verify that all listed samples/cases exist in the database, prior to attempting to parse the file and load data into the database ### [ ] phenose File(s) This is a proposed addition for our specific use-case. If the data in the pheno file(s) was derived from averaging values, then the user could provide the corresponding "standard error" file(s). -* [ ] Check for a minimal number of decimal places (six?) +Has similar QC checks to those for the "pheno" file(s) above. The number of decimal places might vary, however. ## Questions Fred Has |