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| author | Alexander_Kabui | 2025-09-04 17:50:59 +0300 |
|---|---|---|
| committer | Pjotr Prins | 2026-01-05 11:12:10 +0100 |
| commit | 070134cb48cfdcc17b25cd57b2e012afe1371599 (patch) | |
| tree | 58bb0e97e05ab301ed177a42b20e988b5aefd531 | |
| parent | 0c241d7ced63fa8ef15895a7aa99ff740ede63d3 (diff) | |
| download | gn-gemtext-070134cb48cfdcc17b25cd57b2e012afe1371599.tar.gz | |
feat: Minor fixes.
| -rw-r--r-- | topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi b/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi index bea482d..00bd8dd 100644 --- a/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi +++ b/topics/lmms/rqtl2/using-rqtl2-lmdb-adapter.gmi @@ -29,12 +29,12 @@ You can find the `lmdb_matrix.py` script here: guix shell python-click python-lmdb python-wrapper python-numpy -- \ python lmdb_matrix.py import-genotype \ <path-to-genotype-file> <path-to-lmdb-store> -```` +``` ## Dumping the Cross Metadata The script can be found here: -\=> [https://github.com/genenetwork/genenetwork3/pull/235/files](https://github.com/genenetwork/genenetwork3/pull/235/files) # lmdb\_cross\_metadata.py +=> https://github.com/genenetwork/genenetwork3/pull/235/files # lmdb_cross_metadata.py You need to provide a cross file path. The currently supported formats are JSON and YAML. @@ -44,7 +44,7 @@ Example: guix shell python-click python-lmdb python-wrapper python-pyyaml -- \ python dump_metadata.py dump-cross [LMDB_PATH] [CROSS_FILE_PATH] --file-format yaml/json -# or +# Example python dump_metadata.py dump-cross "./test_lmdb_data" "./cross_file.json" ``` |