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author | Munyoki Kilyungi | 2024-07-29 21:33:27 +0300 |
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committer | Munyoki Kilyungi | 2024-07-29 21:33:27 +0300 |
commit | 025219aebd6a47c6bfd65204426c5c87515c378e (patch) | |
tree | d0e7d37613c7d48bb008ba43217842541e2fc212 | |
parent | 19c88026922718375e12e35b717b5da1e72c9d06 (diff) | |
download | gn-gemtext-025219aebd6a47c6bfd65204426c5c87515c378e.tar.gz |
Close old issues and mark some as stalled.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r-- | issues/add-documentation-and-data-retrieval-for-AI-repo.gmi | 2 | ||||
-rw-r--r-- | issues/add-genotype-files-to-rdf.gmi | 2 | ||||
-rw-r--r-- | issues/editing-dataset-metadata.gmi | 2 | ||||
-rw-r--r-- | issues/genenetwork2-cd-sometimes-fails-to-restart.gmi | 3 | ||||
-rw-r--r-- | issues/inspect-discrepancies-between-xapian-and-sql-search.gmi | 2 | ||||
-rw-r--r-- | issues/move-racket-gn-rest-api-to-guile.gmi | 2 | ||||
-rw-r--r-- | issues/move-search-to-xapian.gmi | 2 | ||||
-rw-r--r-- | issues/remove-custom-bootstrap-css.gmi | 2 | ||||
-rw-r--r-- | issues/remove-references-to-old-gn-auth-code.gmi | 2 | ||||
-rw-r--r-- | issues/reset-password-on-container-rebuild.gmi | 1 |
10 files changed, 14 insertions, 6 deletions
diff --git a/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi b/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi index 11f8f30..a96c18d 100644 --- a/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi +++ b/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi @@ -6,7 +6,6 @@ * priority: high * type: ui * keywords: phenotypes -* status: stalled ## Description @@ -15,3 +14,4 @@ * Share alternate way of getting sparql json-ld data from public endpoint outside isql. * Share json-ld gotchas. +* closed diff --git a/issues/add-genotype-files-to-rdf.gmi b/issues/add-genotype-files-to-rdf.gmi index 85ac39c..856c070 100644 --- a/issues/add-genotype-files-to-rdf.gmi +++ b/issues/add-genotype-files-to-rdf.gmi @@ -3,7 +3,7 @@ ## Tags * assigned: bonfacem * type: bug -* status: open, in progress +* status: stalled In Penguin2, genotype files are located in: /export/data/genenetwork/genotype_files/genotype. Each genotype files has an identifier to a dataset it refers to: diff --git a/issues/editing-dataset-metadata.gmi b/issues/editing-dataset-metadata.gmi index 17d1693..70876e0 100644 --- a/issues/editing-dataset-metadata.gmi +++ b/issues/editing-dataset-metadata.gmi @@ -5,7 +5,7 @@ * assigned: bonfacem * priority: high * type: editing -* status: in-progress +* status: stalled * keywords: metadata editing ## Description diff --git a/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi b/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi index d2d2013..603de59 100644 --- a/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi +++ b/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi @@ -10,4 +10,7 @@ A reminder that CD logs are publicly accessible on tux02. => /topics/cd-logs ## Resolution + This issue has been re-opened. Originally, we believed that the restart failures were due to occasional breakage in GN code, and were not a problem with the CI/CD system itself. This will need further investigation to figure out what the root cause is. + +* closed diff --git a/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi b/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi index b3bb932..98b46b6 100644 --- a/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi +++ b/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi @@ -131,3 +131,5 @@ The ordering in the Xapian search and SQL search is different. By default, SQL ``` However, Xapian orders search results by decreasing relevance score. This is configurable. + +* closed diff --git a/issues/move-racket-gn-rest-api-to-guile.gmi b/issues/move-racket-gn-rest-api-to-guile.gmi index 185e7de..659c586 100644 --- a/issues/move-racket-gn-rest-api-to-guile.gmi +++ b/issues/move-racket-gn-rest-api-to-guile.gmi @@ -6,7 +6,7 @@ * priority: medium * type: API, metadata * keywords: API -* status: open +* status: stalled ## Description diff --git a/issues/move-search-to-xapian.gmi b/issues/move-search-to-xapian.gmi index 57612e7..d98be9b 100644 --- a/issues/move-search-to-xapian.gmi +++ b/issues/move-search-to-xapian.gmi @@ -18,3 +18,5 @@ As a work around---to make search work with Python3.10, an inefficient hack was => https://github.com/genenetwork/genenetwork2/pull/805/commits/9a6ddf9f1560b3bc1611f50bf2b94f0dc44652a2 Replace escape with conn.escape_string To get rid of this inheritance, I propose rewriting the search functionality in a more straightforward and functional manner. In doing so, we can also transition to Xapian search, a faster and more efficient search system. + +* closed diff --git a/issues/remove-custom-bootstrap-css.gmi b/issues/remove-custom-bootstrap-css.gmi index 7fa6f24..14c1c35 100644 --- a/issues/remove-custom-bootstrap-css.gmi +++ b/issues/remove-custom-bootstrap-css.gmi @@ -1,7 +1,7 @@ # Remove overrides to bootstrap classes in bootstrap-custom.css * assigned: zachs, bonfacem, alexm - +* status: stalled We have a "bootstrap-custom.css" in GeneNetwork. Consider this snippet: diff --git a/issues/remove-references-to-old-gn-auth-code.gmi b/issues/remove-references-to-old-gn-auth-code.gmi index 1a03c25..8c110aa 100644 --- a/issues/remove-references-to-old-gn-auth-code.gmi +++ b/issues/remove-references-to-old-gn-auth-code.gmi @@ -4,7 +4,7 @@ * assigned: bonfacem * keywords: auth -* status: open +* status: stalled ## Description diff --git a/issues/reset-password-on-container-rebuild.gmi b/issues/reset-password-on-container-rebuild.gmi index b0e4dbb..6c0ad1e 100644 --- a/issues/reset-password-on-container-rebuild.gmi +++ b/issues/reset-password-on-container-rebuild.gmi @@ -2,5 +2,6 @@ ## Tags * assigned: bonfacem +* status: stalled Whenever the virtuoso container is rebuilt, we manually have to reset the password. We should fix this by modifying the virtuoso service so that things are set automatically. |