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authorMunyoki Kilyungi2024-07-29 21:33:27 +0300
committerMunyoki Kilyungi2024-07-29 21:33:27 +0300
commit025219aebd6a47c6bfd65204426c5c87515c378e (patch)
treed0e7d37613c7d48bb008ba43217842541e2fc212
parent19c88026922718375e12e35b717b5da1e72c9d06 (diff)
downloadgn-gemtext-025219aebd6a47c6bfd65204426c5c87515c378e.tar.gz
Close old issues and mark some as stalled.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r--issues/add-documentation-and-data-retrieval-for-AI-repo.gmi2
-rw-r--r--issues/add-genotype-files-to-rdf.gmi2
-rw-r--r--issues/editing-dataset-metadata.gmi2
-rw-r--r--issues/genenetwork2-cd-sometimes-fails-to-restart.gmi3
-rw-r--r--issues/inspect-discrepancies-between-xapian-and-sql-search.gmi2
-rw-r--r--issues/move-racket-gn-rest-api-to-guile.gmi2
-rw-r--r--issues/move-search-to-xapian.gmi2
-rw-r--r--issues/remove-custom-bootstrap-css.gmi2
-rw-r--r--issues/remove-references-to-old-gn-auth-code.gmi2
-rw-r--r--issues/reset-password-on-container-rebuild.gmi1
10 files changed, 14 insertions, 6 deletions
diff --git a/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi b/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi
index 11f8f30..a96c18d 100644
--- a/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi
+++ b/issues/add-documentation-and-data-retrieval-for-AI-repo.gmi
@@ -6,7 +6,6 @@
* priority: high
* type: ui
* keywords: phenotypes
-* status: stalled
## Description
@@ -15,3 +14,4 @@
* Share alternate way of getting sparql json-ld data from public endpoint outside isql.
* Share json-ld gotchas.
+* closed
diff --git a/issues/add-genotype-files-to-rdf.gmi b/issues/add-genotype-files-to-rdf.gmi
index 85ac39c..856c070 100644
--- a/issues/add-genotype-files-to-rdf.gmi
+++ b/issues/add-genotype-files-to-rdf.gmi
@@ -3,7 +3,7 @@
## Tags
* assigned: bonfacem
* type: bug
-* status: open, in progress
+* status: stalled
In Penguin2, genotype files are located in: /export/data/genenetwork/genotype_files/genotype. Each genotype files has an identifier to a dataset it refers to:
diff --git a/issues/editing-dataset-metadata.gmi b/issues/editing-dataset-metadata.gmi
index 17d1693..70876e0 100644
--- a/issues/editing-dataset-metadata.gmi
+++ b/issues/editing-dataset-metadata.gmi
@@ -5,7 +5,7 @@
* assigned: bonfacem
* priority: high
* type: editing
-* status: in-progress
+* status: stalled
* keywords: metadata editing
## Description
diff --git a/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi b/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi
index d2d2013..603de59 100644
--- a/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi
+++ b/issues/genenetwork2-cd-sometimes-fails-to-restart.gmi
@@ -10,4 +10,7 @@ A reminder that CD logs are publicly accessible on tux02.
=> /topics/cd-logs
## Resolution
+
This issue has been re-opened. Originally, we believed that the restart failures were due to occasional breakage in GN code, and were not a problem with the CI/CD system itself. This will need further investigation to figure out what the root cause is.
+
+* closed
diff --git a/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi b/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi
index b3bb932..98b46b6 100644
--- a/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi
+++ b/issues/inspect-discrepancies-between-xapian-and-sql-search.gmi
@@ -131,3 +131,5 @@ The ordering in the Xapian search and SQL search is different. By default, SQL
```
However, Xapian orders search results by decreasing relevance score. This is configurable.
+
+* closed
diff --git a/issues/move-racket-gn-rest-api-to-guile.gmi b/issues/move-racket-gn-rest-api-to-guile.gmi
index 185e7de..659c586 100644
--- a/issues/move-racket-gn-rest-api-to-guile.gmi
+++ b/issues/move-racket-gn-rest-api-to-guile.gmi
@@ -6,7 +6,7 @@
* priority: medium
* type: API, metadata
* keywords: API
-* status: open
+* status: stalled
## Description
diff --git a/issues/move-search-to-xapian.gmi b/issues/move-search-to-xapian.gmi
index 57612e7..d98be9b 100644
--- a/issues/move-search-to-xapian.gmi
+++ b/issues/move-search-to-xapian.gmi
@@ -18,3 +18,5 @@ As a work around---to make search work with Python3.10, an inefficient hack was
=> https://github.com/genenetwork/genenetwork2/pull/805/commits/9a6ddf9f1560b3bc1611f50bf2b94f0dc44652a2 Replace escape with conn.escape_string
To get rid of this inheritance, I propose rewriting the search functionality in a more straightforward and functional manner. In doing so, we can also transition to Xapian search, a faster and more efficient search system.
+
+* closed
diff --git a/issues/remove-custom-bootstrap-css.gmi b/issues/remove-custom-bootstrap-css.gmi
index 7fa6f24..14c1c35 100644
--- a/issues/remove-custom-bootstrap-css.gmi
+++ b/issues/remove-custom-bootstrap-css.gmi
@@ -1,7 +1,7 @@
# Remove overrides to bootstrap classes in bootstrap-custom.css
* assigned: zachs, bonfacem, alexm
-
+* status: stalled
We have a "bootstrap-custom.css" in GeneNetwork. Consider this snippet:
diff --git a/issues/remove-references-to-old-gn-auth-code.gmi b/issues/remove-references-to-old-gn-auth-code.gmi
index 1a03c25..8c110aa 100644
--- a/issues/remove-references-to-old-gn-auth-code.gmi
+++ b/issues/remove-references-to-old-gn-auth-code.gmi
@@ -4,7 +4,7 @@
* assigned: bonfacem
* keywords: auth
-* status: open
+* status: stalled
## Description
diff --git a/issues/reset-password-on-container-rebuild.gmi b/issues/reset-password-on-container-rebuild.gmi
index b0e4dbb..6c0ad1e 100644
--- a/issues/reset-password-on-container-rebuild.gmi
+++ b/issues/reset-password-on-container-rebuild.gmi
@@ -2,5 +2,6 @@
## Tags
* assigned: bonfacem
+* status: stalled
Whenever the virtuoso container is rebuilt, we manually have to reset the password. We should fix this by modifying the virtuoso service so that things are set automatically.