From d029d5d7f8ead1f1de8d318045004a4a6f68f5fb Mon Sep 17 00:00:00 2001 From: Bonface Date: Fri, 9 Feb 2024 09:41:28 -0600 Subject: Update dataset RTF Files. --- general/datasets/MA_M2_0806_P/cases.rtf | 44 +++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 general/datasets/MA_M2_0806_P/cases.rtf (limited to 'general/datasets/MA_M2_0806_P/cases.rtf') diff --git a/general/datasets/MA_M2_0806_P/cases.rtf b/general/datasets/MA_M2_0806_P/cases.rtf new file mode 100644 index 0000000..465b87c --- /dev/null +++ b/general/datasets/MA_M2_0806_P/cases.rtf @@ -0,0 +1,44 @@ +
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The BXD genetic reference panel of recombinant inbred strains consists of just over 80 strains. The BXDs in this data set include 30 of the BXD strains made by Benjamin Taylor at the Jackson Laboratory in the 1970s and 1990s (BXD1 through BXD42). All of these strains are fully inbred. We have also included 24 BXD lines generated by Lu and Peirce. All of these strains have been genotyped at 13,377 SNPs.

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Mouse Diversity Panel (MDP). We have profiled a MDP consisting 15 inbred strains and a pair of F1 hybrids; D2B6F1. These strains were selected for the following reasons: This panel will be a powerful tool in systems genetic analysis of a wide variety of traits, and will provide additional power in fine mapping modulators through an association analysis of sequence variants.

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  1. BTBR T+tf/J
    +     Multiple recessive stock; Homozygotes show repeated waves of hair loss and regrowth, which begin in the nose and pass posteriorly along the body.
    2. +
  2. C3H/HeJ
    +     Sequenced by Perlegen/NIEHS; paternal parent of the BXH panel; Phenome Project A list
    3. +
  3. C57BL/6J
    +     Sequenced by NHGRI; parental strain of AXB/BXA, BXD, and BXH; Phenome Project A list
    4. +
  4. C57BL/6ByJ
    +     Paternal substrain of B6 used to generate the CXB panel
    5. +
  5. CAST/Ei
    +     Collaborative Cross strain sequenced by NIEHS; Phenome Project A list
    6. +
  6. DBA/2J
    +     Sequenced by Perlegen/NIEHS and Celera; paternal parent of the BXD panel; Phenome Project A list
    7. +
  7. KK/HlJ
    +     Sequenced by Perlegen/NIEHS
    8. +
  8. NOD/LtJ
    +     Collaborative Cross strain sequenced by NIEHS; Phenome Project B list; diabetic
    9. +
  9. PWD/PhJ
    +     Sequenced by Perlegen/NIEHS; parental strain for a consomic set by Forjet and colleagues
    10. +
  10. PWK/PhJ
    +     Collaborative Cross strain; Phenome Project D list
    11. +
  11. WSB/EiJ
    +     Collaborative Cross strain sequenced by NIEHS; Phenome Project C list
    12. +
  12. D2B6F1
    + F1 hybrid generated by crossing C57BL/6J with DBA/2J
    13. +
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These inbred strains can be ordered from The Jackson Laboratory. BXD43 through BXD100 are available from Lu Lu and colleagues at UTHSC.P>

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