From e34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534 Mon Sep 17 00:00:00 2001 From: Bonface Date: Thu, 15 Feb 2024 06:09:54 -0600 Subject: Update dataset RTF Files. --- general/datasets/BRF2_M_0304_M/notes.rtf | 5 ----- 1 file changed, 5 deletions(-) delete mode 100644 general/datasets/BRF2_M_0304_M/notes.rtf (limited to 'general/datasets/BRF2_M_0304_M/notes.rtf') diff --git a/general/datasets/BRF2_M_0304_M/notes.rtf b/general/datasets/BRF2_M_0304_M/notes.rtf deleted file mode 100644 index c4a728d..0000000 --- a/general/datasets/BRF2_M_0304_M/notes.rtf +++ /dev/null @@ -1,5 +0,0 @@ -

Data were processed using the Microarray Suite 5 (MAS 5) protocol of Affymetrix. To simplify comparison between transforms, MAS 5 values of each array were log2 transformed and adjusted to an average of 8 units. In general, MAS 5 data do not perform as well as RMA or PDNN transforms.

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Data were processed using the Position-Dependent Nearest Neighbor (PDNN) method developed by Zhang and colleagues (2003. To simplify comparison between transforms, PDNN values of each array were adjusted to an average of 8 units and a variance of 2 units. This data set was run as a single large batch with careful consideration to balancing samples by sex, age, and environment.

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Data were processed using the RMA protocol and are presented with secondary normalization to an average expression value of 8 units. To simplify comparison between transforms, RMA values of each array were adjusted to an average of 8 units and a variance of 2 units. This data set was run as a single large batch with effort to balance samples by sex, age, and environment.

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