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-rwxr-xr-xstory-boards/starting-from-known-gene/generate.sh2
-rw-r--r--story-boards/starting-from-known-gene/starting-from-known-gene.md7
2 files changed, 6 insertions, 3 deletions
diff --git a/story-boards/starting-from-known-gene/generate.sh b/story-boards/starting-from-known-gene/generate.sh
index c44558e..62fdbf6 100755
--- a/story-boards/starting-from-known-gene/generate.sh
+++ b/story-boards/starting-from-known-gene/generate.sh
@@ -17,3 +17,5 @@ convert -extract 570x500+0+90 genenetwork-home.png search.png
ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/gsearch?type=gene&terms=Brca2" --out global-search-gene.png --extract 800x300+0+0
ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P" --out gene-aliases.png --extract 800x800+0+0
+
+# pandoc --toc -w slidy starting-from-known-gene.md > presentation.html
diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md
index 523d4b0..faa8c00 100644
--- a/story-boards/starting-from-known-gene/starting-from-known-gene.md
+++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md
@@ -10,16 +10,17 @@ The top bar of GeneNetwork shows a global search:
We can look for the `Brca2` mouse gene, resulting in
-[![Global search](./global-search-gene.png "Global search gene")]()
+[![Global search](./global-search-gene.png "Global search gene")](https://genenetwork.org/)
FIXME: @zsloan above image should show a table of results too, see https://github.com/genenetwork/genenetwork2/issues/629
-# Find the right alias/name
+---
+## Find the right alias/name
GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P),
you get to the 'trait page' which shows the aliases:
-[![Gene aliases](./gene-aliases.png "Gene aliase")](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P)
+[![](./gene-aliases.png "Gene aliases")](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P)
GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738).