diff options
Diffstat (limited to 'story-boards/starting-from-known-gene')
| -rwxr-xr-x | story-boards/starting-from-known-gene/generate.sh | 2 | ||||
| -rw-r--r-- | story-boards/starting-from-known-gene/starting-from-known-gene.md | 7 |
2 files changed, 6 insertions, 3 deletions
diff --git a/story-boards/starting-from-known-gene/generate.sh b/story-boards/starting-from-known-gene/generate.sh index c44558e..62fdbf6 100755 --- a/story-boards/starting-from-known-gene/generate.sh +++ b/story-boards/starting-from-known-gene/generate.sh @@ -17,3 +17,5 @@ convert -extract 570x500+0+90 genenetwork-home.png search.png ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/gsearch?type=gene&terms=Brca2" --out global-search-gene.png --extract 800x300+0+0 ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P" --out gene-aliases.png --extract 800x800+0+0 + +# pandoc --toc -w slidy starting-from-known-gene.md > presentation.html diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md index 523d4b0..faa8c00 100644 --- a/story-boards/starting-from-known-gene/starting-from-known-gene.md +++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md @@ -10,16 +10,17 @@ The top bar of GeneNetwork shows a global search: We can look for the `Brca2` mouse gene, resulting in -[]() +[](https://genenetwork.org/) FIXME: @zsloan above image should show a table of results too, see https://github.com/genenetwork/genenetwork2/issues/629 -# Find the right alias/name +--- +## Find the right alias/name GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), you get to the 'trait page' which shows the aliases: -[](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P) +[](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P) GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). |