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diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md index 38de598..3eaaafd 100644 --- a/story-boards/starting-from-known-gene/starting-from-known-gene.md +++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md @@ -2,41 +2,30 @@ GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2). -# Table of contents -1. [Global search](#gsearch) -1. [Gene aliases](#alias) -1. [Genewiki](#genewiki) -1. [TODO](#TODO) +## Use the search page -## Use the search page <a name="gsearch" /> +The top bar of GeneNetwork shows a global search: -The top bar of GeneNetwork shows a global search. +[](https://genenetwork.org/) - - -We can look for the `Brca2` mouse gene: - -<p align="center"> - <img src="global-search-gene.png" alt="Global gene search"/> -</p> +We can look for the `Brca2` mouse gene, resulting in +[]() ## Find the right alias/name <a name="alias" /> GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), you get to the 'trait page' which shows the aliases: -<p align="center"> - <img src="gene-aliases.png" alt="Gene aliases"/> -</p> +[](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P) GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). -## Find the GeneNetwork genewiki entry <a name="genewiki" /> +## Find the GeneNetwork genewiki entry GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2). -## TODO <a name="TODO" /> +## TODO * [ ] expand story line * [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi |