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diff --git a/story-boards/starting-from-known-gene.md b/story-boards/starting-from-known-gene.md deleted file mode 100644 index 2370521..0000000 --- a/story-boards/starting-from-known-gene.md +++ /dev/null @@ -1,33 +0,0 @@ -# Storyboard: starting from a known gene - -GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2). - -## Use the search page - -The top bar of GeneNetwork shows a global search. We can look for the `Brca2` mouse gene: - -<p align="center"> - <img src="global-search-gene.png" alt="Global gene search"/> -</p> - - -## Find the right alias/name - -GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), -you get to the 'trait page' which shows the aliases: - -<p align="center"> - <img src="gene-aliases.png" alt="Gene aliases"/> -</p> - -GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). - -## Find the GeneNetwork genewiki entry - -GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2). - -## TODO - -* [ ] expand story line -* [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi -* [ ] migrate GeneWiki entries |