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diff --git a/general/news/news.md b/general/news/news.md index a2c3d5e..f90f789 100644 --- a/general/news/news.md +++ b/general/news/news.md @@ -83,60 +83,8 @@ functions. (Updated Dec 19, 2018 by RW Williams) - - **2018-09-12: GeneNetwork 1 will be supported in 2018 but GeneNetwork - 2 will become the main production server** - - [GeneNetwork 2](http://gn2.genenetwork.org) is ready for testing and - research projects. GeneNetwork 1 (GN1) and GeneNetwork 2 (GN2) share - the a single database, but they use different code and algorithms for - mapping and data analysis. There are some benefits of using GN2, - including more powerful linear mixed model mapping methods that - account for kinship structure. - - The interface of GN2 is still a work in progress. Please send any - suggestion, requests, or bug reports to rwilliams@uthsc.edu. - - **2018-09-12: Notes on new BXD names**. - - 1. [BXD73](http://jaxmice.jax.org/strain/007117), - [BXD73a](http://jaxmice.jax.org/strain/007124) (original known as - *BXD80*), and [BXD73b](http://jaxmice.jax.org/strain/007146) - (originally known as *BXD103*) are genetically very similar. - [BXD73](http://jaxmice.jax.org/strain/007117) and *BXD80* are - genetically identical at 82264 of 100290 markers (82% identical by - descent). [BXD73](http://jaxmice.jax.org/strain/007117) keeps its - original name and JAX identifier number (JR\#7117), whereas - *BXD80* is now referred to as - [BXD73a](http://jaxmice.jax.org/strain/007124) (JR\#7124). - [BXD73](http://jaxmice.jax.org/strain/007117) and BXD103 are - genetically identical at 90917 of 100290 markers (90.6% identical - by descent). *BXD103* is now referred to as - [BXD73b](http://jaxmice.jax.org/strain/007146) (JR\#7146). - 2. [BXD48](http://jaxmice.jax.org/strain/007097) and - [BXD48a](http://jaxmice.jax.org/strain/007139) (originally known - as *BXD96*) are sister substrains, and are genetically identical - at 93485 of 100290 markers (93.2% identical by descent). - [BXD48](http://jaxmice.jax.org/strain/007097) retains its original - name and JAX identifier number (JAX JR\#7097) whereas BXD96 is now - referred to as [BXD48a](http://jaxmice.jax.org/strain/007139) - (JR\#7139). - 3. [BXD65](http://jaxmice.jax.org/strain/007110), - [BXD65a](http://jaxmice.jax.org/strain/007140) (originally known - as *BXD97*), and [BXD65b](http://jaxmice.jax.org/strain/009677) - (originally known as *BXD92*) are sister substrains. - [BXD65](http://jaxmice.jax.org/strain/007110) and *BXD97* are - genetically identical at 92225 of 100290 markers (92% identical by - descent). *BXD97* is now referred to as - [BXD65a](http://jaxmice.jax.org/strain/007140) (JR\#7140). - [BXD65](http://jaxmice.jax.org/strain/007110) and *BXD92* are - genetically identical at 6155 of 6459 markers (95.3% identical by - descent). [BXD65](http://jaxmice.jax.org/strain/007110) retains - its original name and JAX identifier (JR\#7110) whereas *BXD92* is - now referred to as [BXD65b](http://jaxmice.jax.org/strain/009677) - (JR\#9677). - -**2019-12-01: LSRU CC Male Midbrain RNA-Seq (Dec19) TPM Log2.** profiling by array entered into GeneNetwork. + + **2019-12-01: LSRU CC Male Midbrain RNA-Seq (Dec19) TPM Log2.** profiling by array entered into GeneNetwork. - [LSRU CC Male Midbrain RNA-Seq (Dec19) TPM Log2](http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=361) @@ -203,6 +151,58 @@ This dataset is publicly available in most cases. For more information on how to access the data please refer to the link above. + + **2018-09-12: GeneNetwork 1 will be supported in 2018 but GeneNetwork + 2 will become the main production server** + + [GeneNetwork 2](http://gn2.genenetwork.org) is ready for testing and + research projects. GeneNetwork 1 (GN1) and GeneNetwork 2 (GN2) share + the a single database, but they use different code and algorithms for + mapping and data analysis. There are some benefits of using GN2, + including more powerful linear mixed model mapping methods that + account for kinship structure. + + The interface of GN2 is still a work in progress. Please send any + suggestion, requests, or bug reports to rwilliams@uthsc.edu. + + **2018-09-12: Notes on new BXD names**. + + 1. [BXD73](http://jaxmice.jax.org/strain/007117), + [BXD73a](http://jaxmice.jax.org/strain/007124) (original known as + *BXD80*), and [BXD73b](http://jaxmice.jax.org/strain/007146) + (originally known as *BXD103*) are genetically very similar. + [BXD73](http://jaxmice.jax.org/strain/007117) and *BXD80* are + genetically identical at 82264 of 100290 markers (82% identical by + descent). [BXD73](http://jaxmice.jax.org/strain/007117) keeps its + original name and JAX identifier number (JR\#7117), whereas + *BXD80* is now referred to as + [BXD73a](http://jaxmice.jax.org/strain/007124) (JR\#7124). + [BXD73](http://jaxmice.jax.org/strain/007117) and BXD103 are + genetically identical at 90917 of 100290 markers (90.6% identical + by descent). *BXD103* is now referred to as + [BXD73b](http://jaxmice.jax.org/strain/007146) (JR\#7146). + 2. [BXD48](http://jaxmice.jax.org/strain/007097) and + [BXD48a](http://jaxmice.jax.org/strain/007139) (originally known + as *BXD96*) are sister substrains, and are genetically identical + at 93485 of 100290 markers (93.2% identical by descent). + [BXD48](http://jaxmice.jax.org/strain/007097) retains its original + name and JAX identifier number (JAX JR\#7097) whereas BXD96 is now + referred to as [BXD48a](http://jaxmice.jax.org/strain/007139) + (JR\#7139). + 3. [BXD65](http://jaxmice.jax.org/strain/007110), + [BXD65a](http://jaxmice.jax.org/strain/007140) (originally known + as *BXD97*), and [BXD65b](http://jaxmice.jax.org/strain/009677) + (originally known as *BXD92*) are sister substrains. + [BXD65](http://jaxmice.jax.org/strain/007110) and *BXD97* are + genetically identical at 92225 of 100290 markers (92% identical by + descent). *BXD97* is now referred to as + [BXD65a](http://jaxmice.jax.org/strain/007140) (JR\#7140). + [BXD65](http://jaxmice.jax.org/strain/007110) and *BXD92* are + genetically identical at 6155 of 6459 markers (95.3% identical by + descent). [BXD65](http://jaxmice.jax.org/strain/007110) retains + its original name and JAX identifier (JR\#7110) whereas *BXD92* is + now referred to as [BXD65b](http://jaxmice.jax.org/strain/009677) + (JR\#9677). **2018-09-12: UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Log2 and raw |