diff options
Diffstat (limited to 'general/datasets/UTHSC_mm9_B6D2_Ret_0916')
| -rw-r--r-- | general/datasets/UTHSC_mm9_B6D2_Ret_0916/cases.rtf | 980 | ||||
| -rw-r--r-- | general/datasets/UTHSC_mm9_B6D2_Ret_0916/summary.rtf | 9 |
2 files changed, 0 insertions, 989 deletions
diff --git a/general/datasets/UTHSC_mm9_B6D2_Ret_0916/cases.rtf b/general/datasets/UTHSC_mm9_B6D2_Ret_0916/cases.rtf deleted file mode 100644 index ad9776a..0000000 --- a/general/datasets/UTHSC_mm9_B6D2_Ret_0916/cases.rtf +++ /dev/null @@ -1,980 +0,0 @@ -<blockquote> -<table border="1" cellpadding="0" cellspacing="0" style="width:600px"> - <tbody> - <tr> - <td> - <table align="left" border="1" cellpadding="5" cellspacing="1" class="sortable" style="width:600px"> - <tbody> - <tr> - <td>Index</td> - <td>Sample ID</td> - <td>Case ID</td> - <td>Strain</td> - <td>Sex</td> - <td>DOB</td> - <td>Sac date</td> - <td>Age group</td> - <td>Age (days)</td> - <td>Age (month)</td> - <td>EarTag Number</td> - <td>Tube ID</td> - <td>Agilent RNA concentration (ng/ul)</td> - <td>RIN</td> - <td>Nanodrop RNA concentration (ng/ul)</td> - <td>260/280</td> - <td>260/230</td> - <td>Batch ID</td> - <td>Notes</td> - </tr> - <tr> - <td>1</td> - <td>B6.01</td> - <td>071515.08</td> - <td>C57BL/6J</td> - <td>M</td> - <td>06/15/15</td> - <td>07/15/15</td> - <td>1~2</td> - <td>30</td> - <td>1.0</td> - <td> </td> - <td>R11</td> - <td>173</td> - <td>10.00</td> - <td>181.22</td> - <td>2.09</td> - <td>2.12</td> - <td>2</td> - <td>best</td> - </tr> - <tr> - <td>2</td> - <td>B6.02</td> - <td>071515.09</td> - <td>C57BL/6J</td> - <td>M</td> - <td>06/15/15</td> - <td>07/15/15</td> - <td>1~2</td> - <td>30</td> - <td>1.0</td> - <td> </td> - <td>R12</td> - <td>121</td> - <td>N/A</td> - <td>148.52</td> - <td>2.10</td> - <td>1.69</td> - <td>2</td> - <td>best</td> - </tr> - <tr> - <td>3</td> - <td>B6.03</td> - <td>052314.01</td> - <td>C57BL/6J</td> - <td>F</td> - <td>03/23/14</td> - <td>05/23/14</td> - <td>2~4</td> - <td>61</td> - <td>2.0</td> - <td> </td> - <td>Ret 32</td> - <td>68</td> - <td>10.0</td> - <td>48.53</td> - <td>2.02</td> - <td>1.93</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>4</td> - <td>B6.04</td> - <td>062514.01</td> - <td>C57BL/6J</td> - <td>M</td> - <td>04/10/14</td> - <td>06/25/14</td> - <td>2~4</td> - <td>76</td> - <td>2.5</td> - <td> </td> - <td>Ret 21</td> - <td>81</td> - <td>9.0</td> - <td>168.7</td> - <td>2.06</td> - <td>1.97</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>5</td> - <td>B6.05</td> - <td>040816.03</td> - <td>C57BL/6J</td> - <td>M</td> - <td>02/04/16</td> - <td>04/08/16</td> - <td>2~4</td> - <td>64</td> - <td>2.1</td> - <td> </td> - <td>R74</td> - <td>385</td> - <td>10.00</td> - <td>448.16</td> - <td>1.98</td> - <td>2.12</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>6</td> - <td>B6.06</td> - <td>040816.04</td> - <td>C57BL/6J</td> - <td>M</td> - <td>02/04/16</td> - <td>04/08/16</td> - <td>2~4</td> - <td>64</td> - <td>2.1</td> - <td> </td> - <td>R75</td> - <td>226</td> - <td>8.70</td> - <td>167.31</td> - <td>2.04</td> - <td>2.13</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>7</td> - <td>B6.07</td> - <td>041014.19</td> - <td>C57BL/6J</td> - <td>F</td> - <td>10/20/13</td> - <td>04/10/14</td> - <td>5~7</td> - <td>172</td> - <td>5.7</td> - <td> </td> - <td>Ret 10</td> - <td>22</td> - <td>10.0</td> - <td>36.97</td> - <td>2.22</td> - <td>0.051</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>8</td> - <td>B6.08</td> - <td>101813.27</td> - <td>C57BL/6J</td> - <td>M</td> - <td>05/06/13</td> - <td>10/18/13</td> - <td>5~7</td> - <td>165</td> - <td>5.5</td> - <td> </td> - <td>Ret 7</td> - <td>38</td> - <td>10.0</td> - <td>54.47</td> - <td>2.08</td> - <td>0.094</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>9</td> - <td>B6.09</td> - <td>050214.03</td> - <td>C57BL/6J</td> - <td>F</td> - <td>08/14/13</td> - <td>05/02/14</td> - <td>7~9</td> - <td>261</td> - <td>8.7</td> - <td> </td> - <td>Ret 27</td> - <td>20</td> - <td>10.0</td> - <td>54.45</td> - <td>2.11</td> - <td>1.14</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>10</td> - <td>B6.10</td> - <td>041014.24</td> - <td>C57BL/6J</td> - <td>M</td> - <td>09/02/13</td> - <td>04/10/14</td> - <td>7~9</td> - <td>220</td> - <td>7.3</td> - <td> </td> - <td>Ret 12</td> - <td>38</td> - <td>9.50</td> - <td>58.97</td> - <td>2.08</td> - <td>2.14</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>11</td> - <td>B6.11</td> - <td>101813.17</td> - <td>C57BL/6J</td> - <td>F</td> - <td>12/07/12</td> - <td>10/18/13</td> - <td>10~12</td> - <td>315</td> - <td>10.5</td> - <td> </td> - <td>Ret 2</td> - <td>59</td> - <td>9.40</td> - <td>83.86</td> - <td>2.17</td> - <td>1.87</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>12</td> - <td>B6.12</td> - <td>052116.01</td> - <td>C57BL/6J</td> - <td>M</td> - <td>05/19/15</td> - <td>05/22/16</td> - <td>10~12</td> - <td>369</td> - <td>12.3</td> - <td> </td> - <td>R102</td> - <td>293</td> - <td>8.30</td> - <td>179.69</td> - <td>2.06</td> - <td>2.11</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>13</td> - <td>B6.13</td> - <td>052116.02</td> - <td>C57BL/6J</td> - <td>M</td> - <td>05/19/15</td> - <td>05/22/16</td> - <td>10~12</td> - <td>369</td> - <td>12.3</td> - <td> </td> - <td>R103</td> - <td>255</td> - <td>8.40</td> - <td>194.24</td> - <td>2.04</td> - <td>1.82</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>14</td> - <td>B6.14</td> - <td>042114.19</td> - <td>C57BL/6J</td> - <td>F</td> - <td>03/11/13</td> - <td>04/21/14</td> - <td>13~15</td> - <td>406</td> - <td>13.5</td> - <td>1252</td> - <td>Ret 26</td> - <td>28</td> - <td>10.0</td> - <td>39.95</td> - <td>2.22</td> - <td>1.71</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>15</td> - <td>B6.15</td> - <td>050214.07</td> - <td>C57BL/6J</td> - <td>M</td> - <td>03/20/13</td> - <td>05/02/14</td> - <td>13~15</td> - <td>408</td> - <td>13.6</td> - <td> </td> - <td>Ret 28</td> - <td>30</td> - <td>10.0</td> - <td>51.81</td> - <td>2.06</td> - <td>2.07</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>16</td> - <td>B6.16</td> - <td>041714.02</td> - <td>C57BL/6J</td> - <td>M</td> - <td>09/18/12</td> - <td>04/17/14</td> - <td>19~21</td> - <td>576</td> - <td>19.2</td> - <td>1117</td> - <td>Ret 17</td> - <td>25</td> - <td>10.0</td> - <td>51.55</td> - <td>2.13</td> - <td>1.13</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>17</td> - <td>B6.17</td> - <td>041714.03</td> - <td>C57BL/6J</td> - <td>M</td> - <td>09/18/12</td> - <td>04/17/14</td> - <td>19~21</td> - <td>576</td> - <td>19.2</td> - <td>1116</td> - <td>Ret 18</td> - <td>28</td> - <td>10.0</td> - <td>65.11</td> - <td>2.01</td> - <td>2.16</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>18</td> - <td>D2.01</td> - <td>030116.02</td> - <td>DBA/2J</td> - <td>M</td> - <td>01/29/16</td> - <td>03/01/16</td> - <td>1~2</td> - <td>32</td> - <td>1.1</td> - <td> </td> - <td>R63</td> - <td>107</td> - <td>8.80</td> - <td>119.02</td> - <td>2.05</td> - <td>1.79</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>19</td> - <td>D2.02</td> - <td>030116.04</td> - <td>DBA/2J</td> - <td>M</td> - <td>01/29/16</td> - <td>03/01/16</td> - <td>1~2</td> - <td>32</td> - <td>1.1</td> - <td> </td> - <td>R65</td> - <td>202</td> - <td>9.10</td> - <td>250.38</td> - <td>2.03</td> - <td>1.67</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>20</td> - <td>D2.03</td> - <td>062714.02</td> - <td>DBA/2J</td> - <td>F</td> - <td>03/23/14</td> - <td>06/27/14</td> - <td>2~4</td> - <td>104</td> - <td>3.5</td> - <td> </td> - <td>Ret 20a</td> - <td> </td> - <td> </td> - <td>189.3</td> - <td>1.95</td> - <td>1.81</td> - <td>1</td> - <td>No Agilent as of 6/27/2014</td> - </tr> - <tr> - <td>21</td> - <td>D2.04</td> - <td>062714.01</td> - <td>DBA/2J</td> - <td>M</td> - <td>03/19/14</td> - <td>06/27/14</td> - <td>2~4</td> - <td>100</td> - <td>3.3</td> - <td> </td> - <td>Ret 19a</td> - <td> </td> - <td> </td> - <td>154</td> - <td>2.05</td> - <td>1.89</td> - <td>1</td> - <td>No Agilent as of 6/27/2014</td> - </tr> - <tr> - <td>22</td> - <td>D2.05</td> - <td>032316.03</td> - <td>DBA/2J</td> - <td>M</td> - <td>01/23/16</td> - <td>03/23/16</td> - <td>2~4</td> - <td>60</td> - <td>2.0</td> - <td> </td> - <td>R70</td> - <td>99</td> - <td>9.30</td> - <td>99.17</td> - <td>2.04</td> - <td>1.63</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>23</td> - <td>D2.06</td> - <td>032316.04</td> - <td>DBA/2J</td> - <td>M</td> - <td>01/23/16</td> - <td>03/23/16</td> - <td>2~4</td> - <td>60</td> - <td>2.0</td> - <td> </td> - <td>R71</td> - <td>205</td> - <td>9.10</td> - <td>124.33</td> - <td>2.03</td> - <td>1.24</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>24</td> - <td>D2.07</td> - <td>050214.11</td> - <td>DBA/2J</td> - <td>F</td> - <td>12/07/13</td> - <td>05/02/14</td> - <td>5~7</td> - <td>146</td> - <td>4.9</td> - <td> </td> - <td>Ret 29</td> - <td>100</td> - <td>10.0</td> - <td>86.47</td> - <td>2.14</td> - <td>1.9</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>25</td> - <td>D2.08</td> - <td>101813.08</td> - <td>DBA/2J</td> - <td>M</td> - <td>03/21/13</td> - <td>10/18/13</td> - <td>5~7</td> - <td>211</td> - <td>7.0</td> - <td> </td> - <td>Ret 1</td> - <td>52</td> - <td>9.9</td> - <td>86.98</td> - <td>2.11</td> - <td>2.12</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>26</td> - <td>D2.09</td> - <td>041014.23</td> - <td>DBA/2J</td> - <td>F</td> - <td>08/24/13</td> - <td>04/10/14</td> - <td>7~9</td> - <td>229</td> - <td>7.6</td> - <td> </td> - <td>Ret 11</td> - <td>21</td> - <td>9.9</td> - <td>44.39</td> - <td>2.17</td> - <td>1.15</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>27</td> - <td>D2.10</td> - <td>050214.15</td> - <td>DBA/2J</td> - <td>F</td> - <td>07/27/13</td> - <td>05/02/14</td> - <td>7~9</td> - <td>279</td> - <td>9.3</td> - <td> </td> - <td>Ret 30</td> - <td>37</td> - <td>10.0</td> - <td>43.57</td> - <td>2.13</td> - <td>2.04</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>28</td> - <td>D2.11</td> - <td>101813.23</td> - <td>DBA/2J</td> - <td>F</td> - <td>11/29/12</td> - <td>10/18/13</td> - <td>10~12</td> - <td>323</td> - <td>10.8</td> - <td> </td> - <td>Ret 6</td> - <td>77</td> - <td>9.7</td> - <td>105.02</td> - <td>2.06</td> - <td>2.14</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>29</td> - <td>D2.12</td> - <td>101813.19</td> - <td>DBA/2J</td> - <td>M</td> - <td>12/08/12</td> - <td>10/18/13</td> - <td>10~12</td> - <td>314</td> - <td>10.5</td> - <td> </td> - <td>Ret 3</td> - <td>46</td> - <td>9.9</td> - <td>65.7</td> - <td>2.13</td> - <td>1.71</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>30</td> - <td>D2.13</td> - <td>042114.18</td> - <td>DBA/2J</td> - <td>F</td> - <td>03/19/13</td> - <td>04/21/14</td> - <td>13~15</td> - <td>398</td> - <td>13.3</td> - <td>1148</td> - <td>Ret 25</td> - <td>26</td> - <td>9.9</td> - <td>65.53</td> - <td>2.17</td> - <td>2.43</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>31</td> - <td>D2.14</td> - <td>042114.17</td> - <td>DBA/2J</td> - <td>M</td> - <td>03/19/13</td> - <td>04/21/14</td> - <td>13~15</td> - <td>398</td> - <td>13.3</td> - <td>1130</td> - <td>Ret 24</td> - <td>40</td> - <td>9.4</td> - <td>36.98</td> - <td>2.07</td> - <td>0.8</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>32</td> - <td>D2.15</td> - <td>041014.06</td> - <td>DBA/2J</td> - <td>M</td> - <td>9/6/2012</td> - <td>04/10/14</td> - <td>19~21</td> - <td>581</td> - <td>19.4</td> - <td>1123</td> - <td>Ret 8</td> - <td>35</td> - <td>9.9</td> - <td>52.99</td> - <td>2.12</td> - <td>0.091</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>33</td> - <td>D2.16</td> - <td>041014.07</td> - <td>DBA/2J</td> - <td>F</td> - <td>9/6/2012</td> - <td>04/10/14</td> - <td>19~21</td> - <td>581</td> - <td>19.4</td> - <td>1124</td> - <td>Ret 9</td> - <td>30</td> - <td>9.5</td> - <td>52.44</td> - <td>2.19</td> - <td>0.08</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>34</td> - <td>D2GP.01</td> - <td>041416.15</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>03/15/16</td> - <td>04/14/16</td> - <td>1~2</td> - <td>30</td> - <td>1.0</td> - <td> </td> - <td>R92</td> - <td>334</td> - <td>9.10</td> - <td>135.79</td> - <td>1.87</td> - <td>2.23</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>35</td> - <td>D2GP.02</td> - <td>120715.02</td> - <td>DBA-Gpmnb(wp)</td> - <td>M</td> - <td>11/05/15</td> - <td>12/07/15</td> - <td>1~2</td> - <td>32</td> - <td>1.1</td> - <td> </td> - <td>R31</td> - <td>85</td> - <td>9.20</td> - <td>106.06</td> - <td>2.04</td> - <td>2.06</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>36</td> - <td>D2GP.03</td> - <td>041416.04</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>02/02/16</td> - <td>04/14/16</td> - <td>2~4</td> - <td>72</td> - <td>2.4</td> - <td> </td> - <td>R81</td> - <td>112</td> - <td>9.40</td> - <td>94.79</td> - <td>1.94</td> - <td>2.19</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>37</td> - <td>D2GP.04</td> - <td>120815.04</td> - <td>DBA-Gpmnb(wp)</td> - <td>M</td> - <td>10/08/15</td> - <td>12/08/15</td> - <td>2~4</td> - <td>61</td> - <td>2.0</td> - <td> </td> - <td>R39</td> - <td>89</td> - <td>N/A</td> - <td>118.84</td> - <td>2.05</td> - <td>1.97</td> - <td>2</td> - <td> </td> - </tr> - <tr> - <td>38</td> - <td>D2GP.05</td> - <td>101813.21</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>04/09/13</td> - <td>10/18/13</td> - <td>5~7</td> - <td>192</td> - <td>6.4</td> - <td> </td> - <td>Ret 4</td> - <td>53</td> - <td>9.9</td> - <td>74.13</td> - <td>2.14</td> - <td>2.28</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>39</td> - <td>D2GP.06</td> - <td>101813.22</td> - <td>DBA-Gpmnb(wp)</td> - <td>M</td> - <td>04/09/13</td> - <td>10/18/13</td> - <td>5~7</td> - <td>192</td> - <td>6.4</td> - <td> </td> - <td>Ret 5</td> - <td>54</td> - <td>10.0</td> - <td>81.32</td> - <td>2.1</td> - <td>2.19</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>40</td> - <td>D2GP.07</td> - <td>041014.27</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>08/29/13</td> - <td>04/10/14</td> - <td>7~9</td> - <td>224</td> - <td>7.5</td> - <td> </td> - <td>Ret 15</td> - <td>14</td> - <td>10.0</td> - <td>37.03</td> - <td>2.06</td> - <td>1.44</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>41</td> - <td>D2GP.08</td> - <td>041014.28</td> - <td>DBA-Gpmnb(wp)</td> - <td>M</td> - <td>08/29/13</td> - <td>04/10/14</td> - <td>7~9</td> - <td>224</td> - <td>7.5</td> - <td> </td> - <td>Ret 16</td> - <td>29</td> - <td>9.9</td> - <td>63.83</td> - <td>2.03</td> - <td>2.08</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>42</td> - <td>D2GP.09</td> - <td>041014.25</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>06/12/13</td> - <td>04/10/14</td> - <td>10~12</td> - <td>302</td> - <td>10.1</td> - <td> </td> - <td>Ret 13</td> - <td>31</td> - <td>9.8</td> - <td>60.73</td> - <td>2.07</td> - <td>2.12</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>43</td> - <td>D2GP.10</td> - <td>041014.26</td> - <td>DBA-Gpmnb(wp)</td> - <td>M</td> - <td>06/12/13</td> - <td>04/10/14</td> - <td>10~12</td> - <td>302</td> - <td>10.1</td> - <td> </td> - <td>Ret 14</td> - <td>24</td> - <td>10.0</td> - <td>65.1</td> - <td>2.06</td> - <td>1.09</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>44</td> - <td>D2GP.11</td> - <td>042114.08</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>01/14/13</td> - <td>04/21/14</td> - <td>13~15</td> - <td>462</td> - <td>15.4</td> - <td>1021</td> - <td>Ret 22</td> - <td>87</td> - <td>9.0</td> - <td>150.69</td> - <td>2.09</td> - <td>2.02</td> - <td>1</td> - <td> </td> - </tr> - <tr> - <td>45</td> - <td>D2GP.12</td> - <td>042114.09</td> - <td>DBA-Gpmnb(wp)</td> - <td>F</td> - <td>01/14/13</td> - <td>04/21/14</td> - <td>13~15</td> - <td>462</td> - <td>15.4</td> - <td>1022</td> - <td>Ret 23</td> - <td>18</td> - <td>10.0</td> - <td>44.16</td> - <td>2.11</td> - <td>0.069</td> - <td>1</td> - <td> </td> - </tr> - </tbody> - </table> - </td> - </tr> - </tbody> -</table> -</blockquote> diff --git a/general/datasets/UTHSC_mm9_B6D2_Ret_0916/summary.rtf b/general/datasets/UTHSC_mm9_B6D2_Ret_0916/summary.rtf deleted file mode 100644 index de58298..0000000 --- a/general/datasets/UTHSC_mm9_B6D2_Ret_0916/summary.rtf +++ /dev/null @@ -1,9 +0,0 @@ -<p>This is an array data set generated using the Affymetrix Genechip Mouse 1.0 ST array. Please see the companion microRNA (miRNA) data set.</p> - -<p>All of these data sets provides estimates of expression for 45 retinas from C57BL/6J (B6 cases B6.01 to B6.17), DBA/2J (cases D2.01 to D2.16), and DBA/2J with a wildtype Gpnmb allele (D2GP.01 to D2GP.12). Cases range in age from 30 to 576 days and include both sexes.</p> - -<p>We are using these data in combination with the micro RNA array 4.0 to study normal and glaucomatous changes in gene expression as a function of age. </p> - -<p>Please contact Lu Lu (lulu@uthsc.edu), Robert W. Williams (rwilliams@uthsc.edu), or Junming Yue (jyue@uthsc.edu).</p> - -<p>Supported in part by Research to Prevent Blindness.</p> |