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Diffstat (limited to 'api/questions-to-ask-GN.md')
| -rw-r--r-- | api/questions-to-ask-GN.md | 21 |
1 files changed, 13 insertions, 8 deletions
diff --git a/api/questions-to-ask-GN.md b/api/questions-to-ask-GN.md index 0bc66d6..ba16793 100644 --- a/api/questions-to-ask-GN.md +++ b/api/questions-to-ask-GN.md @@ -515,6 +515,18 @@ curl -s "https://genenetwork.org/api3/api/search/?query=ucla+bdf2&per_page=2&typ This should work on actual dataset identifiers. +## How many phenotypes do we have for each species? + +Could we apply some filters to choose the phenotypes to use (is it easy to discard the mapping trait with specific LRS threshold)? + +## Are there genetic variants (SNPs, indels, etc.) linked to a particular trait? + +PheWAS or reversed genetics. +It would be nice to insert a marker we are interested in and see the correlations with the traits, the result could be a graph or a table. + +## Which genes or genomic regions show conserved synteny across the species we are interested in? + + # More All computations in GN can be exposed through the API. @@ -544,11 +556,4 @@ Finally the SPARQL endpoint which is driven by RDF generated with Visit * https://sparql.genenetwork.org/sparql -* -### How many phenotypes do we have for each species? -Could we apply some filters to choose the phenotypes to use (is it easy to discard the mapping trait with specific LRS threshold)? - -### Are there genetic variants (SNPs, indels, etc.) linked to a particular trait? -It would be nice to insert a marker we are interested in and see the correlations with the traits, the result could be a graph or a table. - -### Which genes or genomic regions show conserved synteny across the species we are interested in? +* |